Home About Us Contact What's New Register
Home>Organism>Klebsiella PasteurMLST>Isolate information
Help

Full information on isolate IPEUC-1570 (id:375)

Projects

This isolate is a member of the following projects:

Public isolates
This project contains the isolates that should be publicly available through the public access database.
published_genomes
All isolates with published genome imported in BIGSdb, and validated for scgMLST_S study
Bialek et al 2014_EID
167 isolates from Bialek et al. in which the scgMLST-634 scheme was defined (PMID: 25341126)

Provenance/primary metadata

id
375
isolate
IPEUC-1570
aliases
IPEUC-1570; SB3310
sender
Sylvain Brisse, Institut Pasteur, Paris, France
curator
Sebastien Bridel, Institut Pasteur, Paris, France (E-mail: sbridel@pasteur.fr)
update history
736 updates show details
date entered
2009-02-10
datestamp
2022-11-03
taxonomic designation
K. pneumoniae
phylogroup from ST
Kp1 (7 loci)
QC status
0000
isolation year
1988
city
Paris
country
France
continent
Europe
source type
Animal
host
Horse
source details
Unknown
infection
Metritis
other source info
Mare
source lab
Institut Pasteur
K type
K1

Publications (2)

  • Bialek-Davenet S, Criscuolo A, Ailloud F, Passet V, Jones L, Delannoy-Vieillard AS, Garin B, Le Hello S, Arlet G, Nicolas-Chanoine MH, Decré D, Brisse S (2014). Genomic definition of hypervirulent and multidrug-resistant Klebsiella pneumoniae clonal groups. Emerg Infect Dis 20:1812-20
  • Brisse S, Fevre C, Passet V, Issenhuth-Jeanjean S, Tournebize R, Diancourt L, Grimont P (2009). Virulent clones of Klebsiella pneumoniae: identification and evolutionary scenario based on genomic and phenotypic characterization. PLoS One 4:e4982

Sequence bin

contigs
106
total length
5,583,646 bp
max length
440,598 bp
mean length
52,676 bp
N50
114,796
L50
13
N90
35,845
L90
45
N95
19,959
L95
55
%GC
57.20
Ns
0
gaps
0
loci tagged
4,255

Show sequence bin

Assembly checks

CheckStatusWarn/fail reason
Number of contigs
Assembly size
Minimum N50
%GC

Annotation quality metrics

Scheme completion

SchemeScheme lociDesignated lociAnnotation
ScoreStatus
MLST77100
Ribosomal MLST5353100
scgMLST629_S62962799

Analysis

rMLST species identification

RankTaxonTaxonomySupportMatches
SPECIES Klebsiella pneumoniae Proteobacteria > Gammaproteobacteria > Enterobacterales > Enterobacteriaceae > Klebsiella > Klebsiella pneumoniae 100%

Analysis performed: 2022-11-02

Kleborate

species
Klebsiella pneumoniae
species_match
strong
virulence_score
5
resistance_score
0
num_resistance_classes
1
num_resistance_genes
1
Yersiniabactin
ybt 1; ICEKp10
YbST
341
Colibactin
clb 3
CbST
13-2LV
Aerobactin
iuc 1
AbST
1
Salmochelin
iro 1
SmST
2
RmpADC
rmp 1; KpVP-1
RmST
26-1LV
wzi
wzi1
K_locus
KL1
K_type
K1
K_locus_problems
none
K_locus_confidence
Very high
K_locus_identity
99.98%
O_locus
O1/O2v2
O_type
O1
O_locus_problems
none
O_locus_confidence
Very high
O_locus_identity
99.13%
AGly_acquired
aph3-Ia.v1^
Bla_chr
SHV-11.v1^
SHV_mutations
35Q
spurious_resistance_hits
ant(3'')-IIa*?-11%
ybtS
2
ybtX
2
ybtQ
2
ybtP
2
ybtA
2
irp2
6
irp1
12
ybtU
2
ybtT
2
ybtE
2
fyuA
2
clbA
2
clbB
3
clbC
2
clbD
2
clbE
2
clbF
2
clbG
2
clbH
4
clbI
2
clbL
2
clbM
2
clbN
2
clbO
2
clbP
2
clbQ
2
iucA
1
iucB
1
iucC
1
iucD
1
iutA
1
iroB
1
iroC
4
iroD
1
iroN
1
rmpA
2
rmpD
2
rmpC
17
spurious_virulence_hits
rmpA_55*-0%;rmpA_40*-48%

Analysis performed: 2023-07-21; Kleborate v2.3.2

Similar isolates (determined by classification schemes)

Experimental schemes are subject to change and are not a stable part of the nomenclature.

Classification schemeUnderlying schemeClustering methodMismatch thresholdStatusGroup
klebs_species_v1.0scgMLST629_SSingle-linkage610experimental1 (13436 isolates)
klebs_subspecies_v1.0scgMLST629_SSingle-linkage585experimental1 (13415 isolates)
klebs_sublineage_v1.0scgMLST629_SSingle-linkage190experimental6 (143 isolates)
klebs_clonalgroup_v1.0scgMLST629_SSingle-linkage43experimental6 (143 isolates)
klebs_species_v1.0scgMLST629_SSingle-linkage610experimental1 (13436 isolates)
klebs_subspecies_v1.0scgMLST629_SSingle-linkage585experimental1 (13415 isolates)
klebs_sublineage_v1.0scgMLST629_SSingle-linkage190experimental6 (143 isolates)
klebs_clonalgroup_v1.0scgMLST629_SSingle-linkage43experimental6 (143 isolates)

Schemes and loci

Tools

Export:
Third party:
Analysis: