Full information on isolate KK194 (id:77)

Projects

This isolate is a member of the following projects:

public
Public isolates
Murik_2021
Genomic insights into the population structure and virulence of Kingella kingae: Infection of Kingella kingae in young children may result in a variety of clinical outcomes including skeletal infections, bacteremia and endocarditis. However, the factor determining the type and severity of the desease are not known. We used a comperative genomic approach in order to find genetic factors distigushing isolates taken from patients with different clinical outcomes, as well as asymptomatic carriers.

Provenance/primary metadata

id
77
taxonomic designation
K. kingae
isolate
KK194
PFGE clone
LENIN
isolation year
2003
country of isolation
Russia
city or region
St Petersburg
sample origin
Oropharynx
disease
Asymptomatical carriage
class of disease
Carriage
sender
Bidet Philippe, APHP Robert-Debre Hospital, Paris, France
curator
Sylvain Brisse, Institut Pasteur, Paris, France (E-mail: sylvain.brisse@pasteur.fr)
update history
1 update show details
date entered
2015-04-23
datestamp
2015-04-23

Sequence bin

contigs
106
total length
1,940,107 bp
max length
120,572 bp
mean length
18,303 bp
N50
76,686
L50
10
N90
11,504
L90
35
N95
5,338
L95
47
%GC
46.66
Ns
100
gaps
1
loci tagged
0

Show sequence bin

Schemes and loci

MLST

abcZ (abcZ)
11
adk (adk)
2
aroE (aroE)
4
cpn60 (cpn60)
3
gdh (gdh)
4
recA (recA)
3
ST
9

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