Full information on isolate NCK_SE0021 (id:529)
Provenance/primary metadata
- id
- 529
- isolate
- NCK_SE0021
- isolation year
- 2015
- world region
- Europe
- country
- France
- city
- Paris
- host
- Human
- neonate
- no
- other strain info
- ST5
- source
- Bone
- infection
- Infection
- other infection info
- Bone biospy
- MSSE MRSE
- MRSE
- sender
- Julien Guglielmini, Institut Pasteur
- curator
- Auto Tagger
- update history
- 9 updates show details
- date entered
- 2017-02-27
- datestamp
- 2022-12-22
Sequence bin
- contigs
- 203
- total length
- 2,518,294 bp
- max length
- 200,674 bp
- mean length
- 12,406 bp
- N50
- 77,828
- L50
- 12
- N90
- 19,267
- L90
- 40
- N95
- 11,230
- L95
- 48
- %GC
- 32.23
- Ns
- 50
- gaps
- 5
- loci tagged
- 755
Assembly checks
| Check | Status | Warn/fail reason |
|---|---|---|
| Number of contigs | ||
| Assembly size | ||
| Minimum N50 | ||
| %GC |
Similar isolates (determined by classification schemes)
Experimental schemes are subject to change and are not a stable part of the nomenclature.
| Classification scheme | Underlying scheme | Clustering method | Mismatch threshold | Status | Group |
|---|---|---|---|---|---|
| Clustering-134 | cgMLST | Single-linkage | 134 | experimental | 6 (41 isolates) |
| Clustering-468 | cgMLST | Single-linkage | 468 | experimental | 1 (417 isolates) |
| test-105 | cgMLST | Single-linkage | 105 | experimental | 6 (41 isolates) |
| Clustering-134 | cgMLST | Single-linkage | 134 | experimental | 6 (41 isolates) |
| Clustering-468 | cgMLST | Single-linkage | 468 | experimental | 1 (417 isolates) |
| test-105 | cgMLST | Single-linkage | 105 | experimental | 6 (41 isolates) |
Schemes and loci
Navigate and select schemes within tree to display allele designations
Tools
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