Full information on isolate 949_S8 (id:5)
Provenance/primary metadata
- id
- 5
- isolate
- 949_S8
- alias
- CP010942
- isolation year
- 2012
- world region
- Africa
- country
- South Africa
- host
- Human
- source
- Unknown
- infection
- Unknown
- MSSE MRSE
- MRSE
- sender
- Julien Guglielmini, Institut Pasteur
- curator
- Auto Tagger
- update history
- 5 updates show details
- date entered
- 2016-05-23
- datestamp
- 2022-12-22
Publication (1)
- Biswas RK, Kock MM, Adelowotan T, Strasheim W, Mahomed TG, Salawu A, Ehlers MM (2015). Draft Genome Sequences of Five Clinical Methicillin-Resistant Staphylococcus aureus Isolates and a Methicillin-Resistant Staphylococcus epidermidis Isolate. Genome Announc 3:
Assembly checks
| Check | Status | Warn/fail reason |
|---|---|---|
| Number of contigs | ||
| Assembly size | ||
| Minimum N50 | ||
| %GC |
Similar isolates (determined by classification schemes)
Some groups only contain this isolate. Show single groups
Experimental schemes are subject to change and are not a stable part of the nomenclature.
| Classification scheme | Underlying scheme | Clustering method | Mismatch threshold | Status | Group |
|---|---|---|---|---|---|
| Clustering-468 | cgMLST | Single-linkage | 468 | experimental | 1 (417 isolates) |
| Clustering-134 | cgMLST | Single-linkage | 134 | experimental | 5 (1 isolate) |
| Clustering-468 | cgMLST | Single-linkage | 468 | experimental | 1 (417 isolates) |
| test-105 | cgMLST | Single-linkage | 105 | experimental | 5 (1 isolate) |
Schemes and loci
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