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Full information on isolate 1562/00 TW (id:437)

Provenance/primary metadata

id: 437
isolate: 1562/00 TW
isolation year: 2000
world region: Europe
country: Germany
host: Human
other strain info: ST 22 ; group A
source: Catheter
infection: Infection
sender: Julien Guglielmini, Institut Pasteur
curator: Auto Tagger
update history: 9 updates show details
date entered: 2017-01-09
datestamp: 2022-12-22

Publication (1)

Harris LG, Murray S, Pascoe B, Bray J, Meric G, Mageiros L, Wilkinson TS, Jeeves R, Rohde H, Schwarz S, de Lencastre H, Miragaia M, Rolo J, Bowden R, Jolley KA, Maiden MC, Mack D, Sheppard SK (2016). Biofilm Morphotypes and Population Structure among Staphylococcus epidermidis from Commensal and Clinical Samples. PLoS One 11:e0151240

Sequence bin

contigs: 95
total length: 2,562,989 bp
max length: 446,548 bp
mean length: 26,979 bp
N50: 124,132
L50: 6
N90: 41,974
L90: 18
N95: 27,635
L95: 21
%GC: 31.94
Ns: 0
gaps: 0
loci tagged: 771

Show sequence bin

Assembly checks

Check	Status	Warn/fail reason
Number of contigs
Assembly size
Minimum N50
%GC

Analysis

rMLST species identification

Rank	Taxon	Taxonomy	Support	Matches
SPECIES	Staphylococcus epidermidis	Firmicutes > Bacilli > Bacillales > Staphylococcaceae > Staphylococcus > Staphylococcus epidermidis	98%

Analysis performed: 2022-12-27

Similar isolates (determined by classification schemes)

Experimental schemes are subject to change and are not a stable part of the nomenclature.

Classification scheme	Underlying scheme	Clustering method	Mismatch threshold	Status	Group
Clustering-134	cgMLST	Single-linkage	134	experimental	38 (45 isolates)
Clustering-468	cgMLST	Single-linkage	468	experimental	1 (417 isolates)
test-105	cgMLST	Single-linkage	105	experimental	40 (42 isolates)
Clustering-134	cgMLST	Single-linkage	134	experimental	38 (45 isolates)
Clustering-468	cgMLST	Single-linkage	468	experimental	1 (417 isolates)
test-105	cgMLST	Single-linkage	105	experimental	40 (42 isolates)

Schemes and loci

All loci

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