Full information on isolate 55A (id:405)
Provenance/primary metadata
- id
- 405
- isolate
- 55A
- isolation year
- 2002
- world region
- Europe
- country
- Germany
- host
- Human
- other strain info
- ST 22 ; group A
- source
- Orthopaedic material
- infection
- Infection
- other infection info
- Prosthetic Joint
- sender
- Julien Guglielmini, Institut Pasteur
- curator
- Auto Tagger
- update history
- 10 updates show details
- date entered
- 2017-01-09
- datestamp
- 2022-12-22
Publication (1)
- Harris LG, Murray S, Pascoe B, Bray J, Meric G, Mageiros L, Wilkinson TS, Jeeves R, Rohde H, Schwarz S, de Lencastre H, Miragaia M, Rolo J, Bowden R, Jolley KA, Maiden MC, Mack D, Sheppard SK (2016). Biofilm Morphotypes and Population Structure among Staphylococcus epidermidis from Commensal and Clinical Samples. PLoS One 11:e0151240
Sequence bin
- contigs
- 69
- total length
- 2,591,043 bp
- max length
- 490,253 bp
- mean length
- 37,552 bp
- N50
- 117,191
- L50
- 6
- N90
- 42,578
- L90
- 18
- N95
- 19,892
- L95
- 22
- %GC
- 32.06
- Ns
- 0
- gaps
- 0
- loci tagged
- 771
Assembly checks
| Check | Status | Warn/fail reason |
|---|---|---|
| Number of contigs | ||
| Assembly size | ||
| Minimum N50 | ||
| %GC |
Similar isolates (determined by classification schemes)
Experimental schemes are subject to change and are not a stable part of the nomenclature.
| Classification scheme | Underlying scheme | Clustering method | Mismatch threshold | Status | Group |
|---|---|---|---|---|---|
| Clustering-134 | cgMLST | Single-linkage | 134 | experimental | 38 (45 isolates) |
| Clustering-468 | cgMLST | Single-linkage | 468 | experimental | 1 (417 isolates) |
| test-105 | cgMLST | Single-linkage | 105 | experimental | 40 (42 isolates) |
| Clustering-134 | cgMLST | Single-linkage | 134 | experimental | 38 (45 isolates) |
| Clustering-468 | cgMLST | Single-linkage | 468 | experimental | 1 (417 isolates) |
| test-105 | cgMLST | Single-linkage | 105 | experimental | 40 (42 isolates) |
Schemes and loci
Navigate and select schemes within tree to display allele designations
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