Full information on isolate SEI (id:4)
Provenance/primary metadata
- id
- 4
- isolate
- SEI
- aliases
- AmMS 205; ATCC 49134
- world region
- North America
- country
- USA
- host
- Human
- source
- Unknown
- infection
- Unknown
- sender
- Julien Guglielmini, Institut Pasteur
- curator
- Auto Tagger
- update history
- 6 updates show details
- date entered
- 2016-05-23
- datestamp
- 2022-12-22
Publication (1)
- Davenport KW, Daligault HE, Minogue TD, Bishop-Lilly KA, Broomall SM, Bruce DC, Chain PS, Coyne SR, Frey KG, Gibbons HS, Jaissle J, Redden CL, Rosenzweig CN, Scholz MB, Teshima H, Johnson SL (2014). Complete Genome Assembly of Staphylococcus epidermidis AmMS 205. Genome Announc 2:
Sequence bin
- contigs
- 2
- total length
- 2,538,314 bp
- max length
- 2,500,626 bp
- mean length
- 1,269,157 bp
- N50
- 2,500,626
- L50
- 1
- N90
- 2,500,626
- L90
- 1
- N95
- 2,500,626
- L95
- 1
- %GC
- 32.05
- Ns
- 0
- gaps
- 0
- loci tagged
- 762
Assembly checks
| Check | Status | Warn/fail reason |
|---|---|---|
| Number of contigs | ||
| Assembly size | ||
| Minimum N50 | ||
| %GC |
Similar isolates (determined by classification schemes)
Some groups only contain this isolate. Show single groups
Experimental schemes are subject to change and are not a stable part of the nomenclature.
| Classification scheme | Underlying scheme | Clustering method | Mismatch threshold | Status | Group |
|---|---|---|---|---|---|
| Clustering-468 | cgMLST | Single-linkage | 468 | experimental | 1 (417 isolates) |
| Clustering-134 | cgMLST | Single-linkage | 134 | experimental | 4 (1 isolate) |
| Clustering-468 | cgMLST | Single-linkage | 468 | experimental | 1 (417 isolates) |
| test-105 | cgMLST | Single-linkage | 105 | experimental | 4 (1 isolate) |
Schemes and loci
Navigate and select schemes within tree to display allele designations
Tools
Export:
Analysis: