Full information on isolate VCU120 (id:375)
Provenance/primary metadata
- id
- 375
- isolate
- VCU120
- world region
- North America
- country
- USA
- host
- Human
- other strain info
- ST22 ; CC2 ; group A
- source
- Unknown
- infection
- Infection
- other infection info
- Disease ; Pneumonia
- MSSE MRSE
- MRSE
- sender
- Julien Guglielmini, Institut Pasteur
- curator
- Auto Tagger
- update history
- 8 updates show details
- date entered
- 2016-05-23
- datestamp
- 2022-12-22
Sequence bin
- contigs
- 61
- total length
- 2,553,157 bp
- max length
- 374,122 bp
- mean length
- 41,856 bp
- N50
- 109,995
- L50
- 6
- N90
- 26,831
- L90
- 21
- N95
- 14,313
- L95
- 28
- %GC
- 31.84
- Ns
- 0
- gaps
- 0
- loci tagged
- 770
Assembly checks
| Check | Status | Warn/fail reason |
|---|---|---|
| Number of contigs | ||
| Assembly size | ||
| Minimum N50 | ||
| %GC |
Similar isolates (determined by classification schemes)
Experimental schemes are subject to change and are not a stable part of the nomenclature.
| Classification scheme | Underlying scheme | Clustering method | Mismatch threshold | Status | Group |
|---|---|---|---|---|---|
| Clustering-134 | cgMLST | Single-linkage | 134 | experimental | 38 (45 isolates) |
| Clustering-468 | cgMLST | Single-linkage | 468 | experimental | 1 (417 isolates) |
| test-105 | cgMLST | Single-linkage | 105 | experimental | 40 (42 isolates) |
| Clustering-134 | cgMLST | Single-linkage | 134 | experimental | 38 (45 isolates) |
| Clustering-468 | cgMLST | Single-linkage | 468 | experimental | 1 (417 isolates) |
| test-105 | cgMLST | Single-linkage | 105 | experimental | 40 (42 isolates) |
Schemes and loci
Navigate and select schemes within tree to display allele designations
Tools
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