Full information on isolate VCU045 (id:365)
Provenance/primary metadata
- id
- 365
- isolate
- VCU045
- world region
- North America
- country
- USA
- host
- Human
- other strain info
- ST5 ; CC2 ; group A
- source
- Unknown
- infection
- Infection
- other infection info
- Disease ; Pneumonia
- MSSE MRSE
- MRSE
- sender
- Julien Guglielmini, Institut Pasteur
- curator
- Auto Tagger
- update history
- 8 updates show details
- date entered
- 2016-05-23
- datestamp
- 2022-12-22
Sequence bin
- contigs
- 62
- total length
- 2,481,665 bp
- max length
- 253,788 bp
- mean length
- 40,027 bp
- N50
- 76,713
- L50
- 10
- N90
- 23,368
- L90
- 31
- N95
- 14,320
- L95
- 38
- %GC
- 32.10
- Ns
- 0
- gaps
- 0
- loci tagged
- 761
Assembly checks
| Check | Status | Warn/fail reason |
|---|---|---|
| Number of contigs | ||
| Assembly size | ||
| Minimum N50 | ||
| %GC |
Similar isolates (determined by classification schemes)
Experimental schemes are subject to change and are not a stable part of the nomenclature.
| Classification scheme | Underlying scheme | Clustering method | Mismatch threshold | Status | Group |
|---|---|---|---|---|---|
| Clustering-134 | cgMLST | Single-linkage | 134 | experimental | 6 (41 isolates) |
| Clustering-468 | cgMLST | Single-linkage | 468 | experimental | 1 (417 isolates) |
| test-105 | cgMLST | Single-linkage | 105 | experimental | 6 (41 isolates) |
| Clustering-134 | cgMLST | Single-linkage | 134 | experimental | 6 (41 isolates) |
| Clustering-468 | cgMLST | Single-linkage | 468 | experimental | 1 (417 isolates) |
| test-105 | cgMLST | Single-linkage | 105 | experimental | 6 (41 isolates) |
Schemes and loci
Navigate and select schemes within tree to display allele designations
Tools
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