Full information on isolate M0026 (id:343)
Provenance/primary metadata
- id
- 343
- isolate
- M0026
- isolation year
- 2003
- world region
- North America
- country
- USA
- city
- Boston
- host
- Unknown
- source
- Blood
- infection
- Unknown
- sender
- Julien Guglielmini, Institut Pasteur
- curator
- Auto Tagger
- update history
- 8 updates show details
- date entered
- 2016-05-23
- datestamp
- 2022-12-22
Sequence bin
- contigs
- 67
- total length
- 2,526,300 bp
- max length
- 327,449 bp
- mean length
- 37,706 bp
- N50
- 98,451
- L50
- 8
- N90
- 19,441
- L90
- 29
- N95
- 9,312
- L95
- 39
- %GC
- 31.99
- Ns
- 595
- gaps
- 2
- loci tagged
- 766
Assembly checks
| Check | Status | Warn/fail reason |
|---|---|---|
| Number of contigs | ||
| Assembly size | ||
| Minimum N50 | ||
| %GC |
Similar isolates (determined by classification schemes)
Experimental schemes are subject to change and are not a stable part of the nomenclature.
| Classification scheme | Underlying scheme | Clustering method | Mismatch threshold | Status | Group |
|---|---|---|---|---|---|
| Clustering-134 | cgMLST | Single-linkage | 134 | experimental | 6 (41 isolates) |
| Clustering-468 | cgMLST | Single-linkage | 468 | experimental | 1 (417 isolates) |
| test-105 | cgMLST | Single-linkage | 105 | experimental | 6 (41 isolates) |
| Clustering-134 | cgMLST | Single-linkage | 134 | experimental | 6 (41 isolates) |
| Clustering-468 | cgMLST | Single-linkage | 468 | experimental | 1 (417 isolates) |
| test-105 | cgMLST | Single-linkage | 105 | experimental | 6 (41 isolates) |
Schemes and loci
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Tools
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