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Full information on isolate NGS-ED-1118 (id:34)

Provenance/primary metadata

id
34
isolate
NGS-ED-1118
isolation year
2013
world region
Europe
country
UK
city
Edinburgh
host
Human
source
Blood
infection
Infection
other infection info
Disease
sender
Julien Guglielmini, Institut Pasteur
curator
Auto Tagger
update history
9 updates show details
date entered
2016-05-23
datestamp
2022-12-22

Publication (1)

  • Walsh P, Bekaert M, Carroll J, Manning T, Kelly B, O'Driscoll A, Lu X, Smith C, Dickinson P, Templeton K, Ghazal P, Sleator RD (2015). Draft Genome Sequences of Six Different Staphylococcus epidermidis Clones, Isolated Individually from Preterm Neonates Presenting with Sepsis at Edinburgh's Royal Infirmary. Genome Announc 3:

Sequence bin

contigs
48
total length
2,621,049 bp
max length
206,303 bp
mean length
54,606 bp
N50
94,331
L50
9
N90
39,853
L90
26
N95
25,561
L95
30
%GC
31.89
Ns
0
gaps
0
loci tagged
771

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Assembly checks

CheckStatusWarn/fail reason
Number of contigs
Assembly size
Minimum N50
%GC

Analysis

rMLST species identification

RankTaxonTaxonomySupportMatches
SPECIES Staphylococcus epidermidis Firmicutes > Bacilli > Bacillales > Staphylococcaceae > Staphylococcus > Staphylococcus epidermidis 100%

Analysis performed: 2022-12-27

Similar isolates (determined by classification schemes)

Experimental schemes are subject to change and are not a stable part of the nomenclature.

Classification schemeUnderlying schemeClustering methodMismatch thresholdStatusGroup
Clustering-134cgMLSTSingle-linkage134experimental19 (141 isolates)
Clustering-468cgMLSTSingle-linkage468experimental1 (417 isolates)
test-105cgMLSTSingle-linkage105experimental19 (128 isolates)
Clustering-134cgMLSTSingle-linkage134experimental19 (141 isolates)
Clustering-468cgMLSTSingle-linkage468experimental1 (417 isolates)
test-105cgMLSTSingle-linkage105experimental19 (128 isolates)

Schemes and loci

Navigate and select schemes within tree to display allele designations

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