Full information on isolate NGS-ED-1111 (id:32)
Provenance/primary metadata
- id
- 32
- isolate
- NGS-ED-1111
- isolation year
- 2013
- world region
- Europe
- country
- UK
- city
- Edinburgh
- host
- Human
- source
- Blood
- infection
- Infection
- other infection info
- Disease
- sender
- Julien Guglielmini, Institut Pasteur
- curator
- Auto Tagger
- update history
- 9 updates show details
- date entered
- 2016-05-23
- datestamp
- 2022-12-22
Publication (1)
- Walsh P, Bekaert M, Carroll J, Manning T, Kelly B, O'Driscoll A, Lu X, Smith C, Dickinson P, Templeton K, Ghazal P, Sleator RD (2015). Draft Genome Sequences of Six Different Staphylococcus epidermidis Clones, Isolated Individually from Preterm Neonates Presenting with Sepsis at Edinburgh's Royal Infirmary. Genome Announc 3:
Sequence bin
- contigs
- 44
- total length
- 2,711,590 bp
- max length
- 250,679 bp
- mean length
- 61,628 bp
- N50
- 117,198
- L50
- 8
- N90
- 42,351
- L90
- 24
- N95
- 26,589
- L95
- 27
- %GC
- 31.99
- Ns
- 0
- gaps
- 0
- loci tagged
- 772
Assembly checks
| Check | Status | Warn/fail reason |
|---|---|---|
| Number of contigs | ||
| Assembly size | ||
| Minimum N50 | ||
| %GC |
Similar isolates (determined by classification schemes)
Experimental schemes are subject to change and are not a stable part of the nomenclature.
| Classification scheme | Underlying scheme | Clustering method | Mismatch threshold | Status | Group |
|---|---|---|---|---|---|
| Clustering-134 | cgMLST | Single-linkage | 134 | experimental | 19 (141 isolates) |
| Clustering-468 | cgMLST | Single-linkage | 468 | experimental | 1 (417 isolates) |
| test-105 | cgMLST | Single-linkage | 105 | experimental | 19 (128 isolates) |
| Clustering-134 | cgMLST | Single-linkage | 134 | experimental | 19 (141 isolates) |
| Clustering-468 | cgMLST | Single-linkage | 468 | experimental | 1 (417 isolates) |
| test-105 | cgMLST | Single-linkage | 105 | experimental | 19 (128 isolates) |
Schemes and loci
Navigate and select schemes within tree to display allele designations
Tools
Export:
Analysis: