Full information on isolate PM221 (id:3)
Provenance/primary metadata
- id
- 3
- isolate
- PM221
- world region
- Europe
- country
- Finland
- host
- Bos taurus
- source
- Unknown
- infection
- Unknown
- sender
- Julien Guglielmini, Institut Pasteur
- curator
- Auto Tagger
- update history
- 7 updates show details
- date entered
- 2016-05-23
- datestamp
- 2022-12-22
Publication (1)
- Savijoki K, Iivanainen A, Siljamäki P, Laine PK, Paulin L, Karonen T, Pyörälä S, Kankainen M, Nyman TA, Salomäki T, Koskinen P, Holm L, Simojoki H, Taponen S, Sukura A, Kalkkinen N, Auvinen P, Varmanen P (2014). Genomics and Proteomics Provide New Insight into the Commensal and Pathogenic Lifestyles of Bovine- and Human-Associated Staphylococcus epidermidis Strains. J Proteome Res 13:3748-3762
Sequence bin
- contigs
- 5
- total length
- 2,597,508 bp
- max length
- 2,490,012 bp
- mean length
- 519,502 bp
- N50
- 2,490,012
- L50
- 1
- N90
- 2,490,012
- L90
- 1
- N95
- 2,490,012
- L95
- 1
- %GC
- 31.95
- Ns
- 0
- gaps
- 0
- loci tagged
- 762
Assembly checks
| Check | Status | Warn/fail reason |
|---|---|---|
| Number of contigs | ||
| Assembly size | ||
| Minimum N50 | ||
| %GC |
Similar isolates (determined by classification schemes)
Experimental schemes are subject to change and are not a stable part of the nomenclature.
| Classification scheme | Underlying scheme | Clustering method | Mismatch threshold | Status | Group |
|---|---|---|---|---|---|
| Clustering-134 | cgMLST | Single-linkage | 134 | experimental | 3 (9 isolates) |
| Clustering-468 | cgMLST | Single-linkage | 468 | experimental | 1 (417 isolates) |
| test-105 | cgMLST | Single-linkage | 105 | experimental | 3 (4 isolates) |
| Clustering-134 | cgMLST | Single-linkage | 134 | experimental | 3 (9 isolates) |
| Clustering-468 | cgMLST | Single-linkage | 468 | experimental | 1 (417 isolates) |
| test-105 | cgMLST | Single-linkage | 105 | experimental | 3 (4 isolates) |
Schemes and loci
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