Full information on isolate Scl25 (id:27)
Provenance/primary metadata
- id
- 27
- isolate
- Scl25
- isolation year
- 2012
- world region
- Europe
- country
- Germany
- city
- Ploen
- host
- Mus spicilegus
- source
- Skin
- infection
- Commensal
- other infection info
- Healthy
- sender
- Julien Guglielmini, Institut Pasteur
- curator
- Auto Tagger
- update history
- 7 updates show details
- date entered
- 2016-05-23
- datestamp
- 2022-12-22
Publication (1)
- Wang J, Kuenzel S, Baines JF (2014). Draft Genome Sequences of 11 Staphylococcus epidermidis Strains Isolated from Wild Mouse Species. Genome Announc 2:
Sequence bin
- contigs
- 139
- total length
- 2,458,755 bp
- max length
- 1,024,232 bp
- mean length
- 17,689 bp
- N50
- 891,487
- L50
- 2
- N90
- 22,795
- L90
- 9
- N95
- 5,813
- L95
- 19
- %GC
- 31.87
- Ns
- 620
- gaps
- 62
- loci tagged
- 760
Assembly checks
| Check | Status | Warn/fail reason |
|---|---|---|
| Number of contigs | ||
| Assembly size | ||
| Minimum N50 | ||
| %GC |
Similar isolates (determined by classification schemes)
Experimental schemes are subject to change and are not a stable part of the nomenclature.
| Classification scheme | Underlying scheme | Clustering method | Mismatch threshold | Status | Group |
|---|---|---|---|---|---|
| Clustering-134 | cgMLST | Single-linkage | 134 | experimental | 18 (4 isolates) |
| Clustering-468 | cgMLST | Single-linkage | 468 | experimental | 1 (417 isolates) |
| test-105 | cgMLST | Single-linkage | 105 | experimental | 18 (4 isolates) |
| Clustering-134 | cgMLST | Single-linkage | 134 | experimental | 18 (4 isolates) |
| Clustering-468 | cgMLST | Single-linkage | 468 | experimental | 1 (417 isolates) |
| test-105 | cgMLST | Single-linkage | 105 | experimental | 18 (4 isolates) |
Schemes and loci
Navigate and select schemes within tree to display allele designations
Tools
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