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Full information on isolate ET-024 (id:16)

Provenance/primary metadata

id
16
isolate
ET-024
isolation year
2010
world region
Europe
country
Belgium
city
Ghent
host
Human
source
Respiratory
infection
Infection
other infection info
Disease ; endotracheal tube; mechanically ventilated patient
sender
Julien Guglielmini, Institut Pasteur
curator
Auto Tagger
update history
11 updates show details
date entered
2016-05-23
datestamp
2022-12-22

Publication (1)

  • Vandecandelaere I, Van Nieuwerburgh F, Deforce D, Nelis HJ, Coenye T (2014). Draft Genome Sequence of Methicillin-Resistant Staphylococcus epidermidis Strain ET-024, Isolated from an Endotracheal Tube Biofilm of a Mechanically Ventilated Patient. Genome Announc 2:

Sequence bin

contigs
102
total length
2,353,739 bp
max length
228,892 bp
mean length
23,076 bp
N50
75,680
L50
11
N90
19,484
L90
34
N95
11,103
L95
43
%GC
32.30
Ns
0
gaps
0
loci tagged
770

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Assembly checks

CheckStatusWarn/fail reason
Number of contigs
Assembly size
Minimum N50
%GC

Analysis

rMLST species identification

RankTaxonTaxonomySupportMatches
SPECIES Staphylococcus epidermidis Firmicutes > Bacilli > Bacillales > Staphylococcaceae > Staphylococcus > Staphylococcus epidermidis 100%

Analysis performed: 2022-12-27

Similar isolates (determined by classification schemes)

Experimental schemes are subject to change and are not a stable part of the nomenclature.

Classification schemeUnderlying schemeClustering methodMismatch thresholdStatusGroup
Clustering-134cgMLSTSingle-linkage134experimental14 (13 isolates)
Clustering-468cgMLSTSingle-linkage468experimental1 (417 isolates)
test-105cgMLSTSingle-linkage105experimental14 (13 isolates)
Clustering-134cgMLSTSingle-linkage134experimental14 (13 isolates)
Clustering-468cgMLSTSingle-linkage468experimental1 (417 isolates)
test-105cgMLSTSingle-linkage105experimental14 (13 isolates)

Schemes and loci

Navigate and select schemes within tree to display allele designations

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