Full information on isolate AU12-03 (id:15)
Provenance/primary metadata
- id
- 15
- isolate
- AU12-03
- world region
- Oceania
- country
- Australia
- host
- Human
- source
- Catheter
- infection
- Infection
- other infection info
- intravascular catheter
- sender
- Julien Guglielmini, Institut Pasteur
- curator
- Auto Tagger
- update history
- 9 updates show details
- date entered
- 2016-05-23
- datestamp
- 2022-12-22
Publication (1)
- Zhang L, Morrison M, Ó Cuív P, Evans P, Rickard CM (2012). Genome sequence of Staphylococcus epidermidis strain AU12-03, isolated from an intravascular catheter. J Bacteriol 194:6639
Sequence bin
- contigs
- 50
- total length
- 2,406,624 bp
- max length
- 210,685 bp
- mean length
- 48,133 bp
- N50
- 81,766
- L50
- 11
- N90
- 25,580
- L90
- 29
- N95
- 16,381
- L95
- 35
- %GC
- 31.98
- Ns
- 0
- gaps
- 0
- loci tagged
- 761
Assembly checks
| Check | Status | Warn/fail reason |
|---|---|---|
| Number of contigs | ||
| Assembly size | ||
| Minimum N50 | ||
| %GC |
Similar isolates (determined by classification schemes)
Experimental schemes are subject to change and are not a stable part of the nomenclature.
| Classification scheme | Underlying scheme | Clustering method | Mismatch threshold | Status | Group |
|---|---|---|---|---|---|
| Clustering-134 | cgMLST | Single-linkage | 134 | experimental | 7 (16 isolates) |
| Clustering-468 | cgMLST | Single-linkage | 468 | experimental | 1 (417 isolates) |
| test-105 | cgMLST | Single-linkage | 105 | experimental | 7 (16 isolates) |
| Clustering-134 | cgMLST | Single-linkage | 134 | experimental | 7 (16 isolates) |
| Clustering-468 | cgMLST | Single-linkage | 468 | experimental | 1 (417 isolates) |
| test-105 | cgMLST | Single-linkage | 105 | experimental | 7 (16 isolates) |
Schemes and loci
Navigate and select schemes within tree to display allele designations
Tools
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