Full information on isolate E13A (id:12)
Provenance/primary metadata
- id
- 12
- isolate
- E13A
- world region
- Unknown
- country
- Unknown
- host
- Human
- source
- Skin
- infection
- Commensal
- other infection info
- Healthy
- sender
- Julien Guglielmini, Institut Pasteur
- curator
- Auto Tagger
- update history
- 7 updates show details
- date entered
- 2016-05-23
- datestamp
- 2022-12-22
Sequence bin
- contigs
- 56
- total length
- 2,408,837 bp
- max length
- 256,373 bp
- mean length
- 43,015 bp
- N50
- 86,971
- L50
- 10
- N90
- 18,845
- L90
- 30
- N95
- 13,175
- L95
- 38
- %GC
- 32.00
- Ns
- 0
- gaps
- 0
- loci tagged
- 762
Assembly checks
| Check | Status | Warn/fail reason |
|---|---|---|
| Number of contigs | ||
| Assembly size | ||
| Minimum N50 | ||
| %GC |
Similar isolates (determined by classification schemes)
Some groups only contain this isolate. Show single groups
Experimental schemes are subject to change and are not a stable part of the nomenclature.
| Classification scheme | Underlying scheme | Clustering method | Mismatch threshold | Status | Group |
|---|---|---|---|---|---|
| Clustering-468 | cgMLST | Single-linkage | 468 | experimental | 1 (417 isolates) |
| Clustering-134 | cgMLST | Single-linkage | 134 | experimental | 11 (1 isolate) |
| Clustering-468 | cgMLST | Single-linkage | 468 | experimental | 1 (417 isolates) |
| test-105 | cgMLST | Single-linkage | 105 | experimental | 11 (1 isolate) |
Schemes and loci
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