Full information on isolate ATCC 12228 (id:1)
Provenance/primary metadata
- id
- 1
- isolate
- ATCC 12228
- world region
- North America
- country
- USA
- host
- Human
- other strain info
- ST8 ; CC2 ; group A
- source
- Unknown
- infection
- Commensal
- other infection info
- Healthy
- MSSE MRSE
- MSSE
- sender
- Julien Guglielmini, Institut Pasteur
- curator
- Auto Tagger
- update history
- 6 updates show details
- date entered
- 2016-05-23
- datestamp
- 2022-12-22
Publication (1)
- Zhang YQ, Ren SX, Li HL, Wang YX, Fu G, Yang J, Qin ZQ, Miao YG, Wang WY, Chen RS, Shen Y, Chen Z, Yuan ZH, Zhao GP, Qu D, Danchin A, Wen YM (2003). Genome-based analysis of virulence genes in a non-biofilm-forming Staphylococcus epidermidis strain (ATCC 12228). Mol Microbiol 49:1577-93
Sequence bin
- contigs
- 7
- total length
- 2,564,615 bp
- max length
- 2,499,279 bp
- mean length
- 366,374 bp
- N50
- 2,499,279
- L50
- 1
- N90
- 2,499,279
- L90
- 1
- N95
- 2,499,279
- L95
- 1
- %GC
- 32.05
- Ns
- 0
- gaps
- 0
- loci tagged
- 764
Assembly checks
| Check | Status | Warn/fail reason |
|---|---|---|
| Number of contigs | ||
| Assembly size | ||
| Minimum N50 | ||
| %GC |
Similar isolates (determined by classification schemes)
Some groups only contain this isolate. Show single groups
Experimental schemes are subject to change and are not a stable part of the nomenclature.
| Classification scheme | Underlying scheme | Clustering method | Mismatch threshold | Status | Group |
|---|---|---|---|---|---|
| Clustering-134 | cgMLST | Single-linkage | 134 | experimental | 1 (2 isolates) |
| Clustering-468 | cgMLST | Single-linkage | 468 | experimental | 1 (417 isolates) |
| Clustering-134 | cgMLST | Single-linkage | 134 | experimental | 1 (2 isolates) |
| Clustering-468 | cgMLST | Single-linkage | 468 | experimental | 1 (417 isolates) |
| test-105 | cgMLST | Single-linkage | 105 | experimental | 1 (1 isolate) |
Schemes and loci
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