Full information on isolate FRC0602 (id:870)
Projects
This isolate is a member of the following project:
- New Caledonia 2015-2019 study
- Isolates included in the New Caledonia study (Tessier et al., submitted in 2022)
Provenance/primary metadata
- id
- 870
- isolate
- FRC0602
- species
- C. diphtheriae
- biovar
- Gravis
- tox gene PCR
- Negative
- isolation year
- 2018
- city
- Noumea
- country
- New Caledonia
- continent
- Oceania
- state or locality
- New Caledonia
- travel history
- None
- host
- Human
- source
- Cutaneous
- infection or disease
- Not documented
- sender
- Sylvain Brisse, Institut Pasteur, Paris, France
- curator
- Auto Tagger
- update history
- 15 updates show details
- date entered
- 2019-03-08
- datestamp
- 2022-08-09
Sequence bin
- contigs
- 47
- total length
- 2,423,631 bp
- max length
- 355,758 bp
- mean length
- 51,567 bp
- N50
- 109,031
- L50
- 6
- N90
- 31,153
- L90
- 20
- N95
- 22,055
- L95
- 25
- %GC
- 53.36
- Ns
- 6
- gaps
- 1
- loci tagged
- 1,376
Assembly checks
| Check | Status | Warn/fail reason |
|---|---|---|
| Number of contigs | ||
| Assembly size | ||
| Minimum N50 | ||
| %GC |
Similar isolates (determined by classification schemes)
Experimental schemes are subject to change and are not a stable part of the nomenclature.
| Classification scheme | Underlying scheme | Clustering method | Mismatch threshold | Status | Group | Fields |
|---|---|---|---|---|---|---|
| Sublineage | cgMLST | Single-linkage | 500 | experimental | 43 (30 isolates) | SL: 228 |
| Genomic_cluster | cgMLST | Single-linkage | 25 | experimental | 312 (10 isolates) | |
| Sublineage | cgMLST | Single-linkage | 500 | experimental | 43 (30 isolates) | SL: 228 |
| Genomic_cluster | cgMLST | Single-linkage | 25 | experimental | 312 (10 isolates) |
Schemes and loci
Navigate and select schemes within tree to display allele designations
Tools
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