Full information on isolate PC0351 (id:1305)
Provenance/primary metadata
- id
- 1305
- isolate
- PC0351
- species
- C. diphtheriae
- biovar
- Mitis
- tox production Elek
- Negative
- country
- USA
- continent
- North America
- travel history
- None
- host
- Human
- accession number
- SAMN13343878
- sender
- Julien Guglielmini, Institut Pasteur
- curator
- Virginie Passet, Institut Pasteur (E-mail: virginie.passet@pasteur.fr)
- update history
- 1299 updates show details
- date entered
- 2021-04-08
- datestamp
- 2022-10-24
Publications (2)
- Guglielmini J, Hennart M, Badell E, Toubiana J, Criscuolo A, Brisse S (2021). Genomic Epidemiology and Strain Taxonomy of Corynebacterium diphtheriae. J Clin Microbiol 59:e0158121
- Xiaoli L, Benoliel E, Peng Y, Aneke J, Cassiday PK, Kay M, McKeirnan S, Duchin JS, Kawakami V, Lindquist S, Acosta AM, DeBolt C, Tondella ML, Weigand MR (2020). Genomic epidemiology of nontoxigenic Corynebacterium diphtheriae from King County, Washington State, USA between July 2018 and May 2019. Microb Genom 6:
Sequence bin
- contigs
- 35
- total length
- 2,497,585 bp
- max length
- 462,583 bp
- mean length
- 71,360 bp
- N50
- 228,850
- L50
- 4
- N90
- 84,887
- L90
- 11
- N95
- 40,888
- L95
- 13
- %GC
- 53.55
- Ns
- 0
- gaps
- 0
- loci tagged
- 1,304
Assembly checks
| Check | Status | Warn/fail reason |
|---|---|---|
| Number of contigs | ||
| Assembly size | ||
| Minimum N50 | ||
| %GC |
Similar isolates (determined by classification schemes)
Experimental schemes are subject to change and are not a stable part of the nomenclature.
| Classification scheme | Underlying scheme | Clustering method | Mismatch threshold | Status | Group | Fields |
|---|---|---|---|---|---|---|
| Sublineage | cgMLST | Single-linkage | 500 | experimental | 21 (32 isolates) | SL: 453 |
| Genomic_cluster | cgMLST | Single-linkage | 25 | experimental | 147 (7 isolates) | |
| Sublineage | cgMLST | Single-linkage | 500 | experimental | 21 (32 isolates) | SL: 453 |
| Genomic_cluster | cgMLST | Single-linkage | 25 | experimental | 147 (7 isolates) |
Schemes and loci
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