Full information on isolate FRC0205 (id:126)
Provenance/primary metadata
- id
- 126
- isolate
- FRC0205
- species
- C. diphtheriae
- biovar
- Mitis
- tox gene PCR
- Negative
- isolation year
- 2014
- city
- Marseille
- country
- France
- continent
- Europe
- state or locality
- Mainland France
- travel history
- None
- host
- Human
- source
- Not documented
- infection or disease
- Wound
- accession number
- ERS4330889
- sender
- Marina Barros, Institut Pasteur
- curator
- Auto Tagger
- update history
- 1338 updates show details
- date entered
- 2017-02-13
- datestamp
- 2021-12-09
Publication (1)
- Hennart M, Panunzi LG, Rodrigues C, Gaday Q, Baines SL, Barros-Pinkelnig M, Carmi-Leroy A, Dazas M, Wehenkel AM, Didelot X, Toubiana J, Badell E, Brisse S (2020). Population genomics and antimicrobial resistance in Corynebacterium diphtheriae. Genome Med 12:107
Sequence bin
- contigs
- 38
- total length
- 2,364,862 bp
- max length
- 310,181 bp
- mean length
- 62,234 bp
- N50
- 178,743
- L50
- 5
- N90
- 37,438
- L90
- 16
- N95
- 21,785
- L95
- 21
- %GC
- 53.62
- Ns
- 0
- gaps
- 0
- loci tagged
- 1,406
Assembly checks
| Check | Status | Warn/fail reason |
|---|---|---|
| Number of contigs | ||
| Assembly size | ||
| Minimum N50 | ||
| %GC |
Similar isolates (determined by classification schemes)
Experimental schemes are subject to change and are not a stable part of the nomenclature.
| Classification scheme | Underlying scheme | Clustering method | Mismatch threshold | Status | Group | Fields |
|---|---|---|---|---|---|---|
| Sublineage | cgMLST | Single-linkage | 500 | experimental | 72 (2 isolates) | SL: 356 |
| Genomic_cluster | cgMLST | Single-linkage | 25 | experimental | 95 (2 isolates) | |
| Sublineage | cgMLST | Single-linkage | 500 | experimental | 72 (2 isolates) | SL: 356 |
| Genomic_cluster | cgMLST | Single-linkage | 25 | experimental | 95 (2 isolates) |
Schemes and loci
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