Full information on isolate C33_S16 (id:546)

Provenance/primary metadata

id
546
isolate
C33_S16
year
2019
country
Qatar
sample origin
Peritoneal fluid
disease
unknpwn
underlying disease
unknown
sender
Clement Tsui, University of British Columbia, Canada
curator
Beate Heym, Hospital group Diaconesses, Paris, France (E-mail: bheym@hopital-dcss.org)
update history
3 updates show details
date entered
2020-08-22
datestamp
2020-08-24

Sequence bin

contigs
156
total length
5,530,190 bp
max length
217,980 bp
mean length
35,450 bp
N50
80,283
L50
24
N90
22,836
L90
72
N95
14,732
L95
87
%GC
64.10
Ns
0
gaps
0
loci tagged
7

Show sequence bin

Analysis

rMLST species identification

RankTaxonTaxonomySupportMatches
SPECIES Mycobacteroides abscessus Actinomycetota > Actinomycetes > Mycobacteriales > Mycobacteriaceae > Mycobacteroides > Mycobacteroides abscessus 100%

Analysis performed: 2023-11-12

Schemes and loci

MLST

argH
3  S 
cya
11  S 
glpK
1  S 
gnd
3  S 
murC
3  S 
pta
3  S 
purH
3  S 
ST
63

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