Home>Organism>Leptospira cgMLST>Plugins>BLAST

BLAST

Please select the required isolate ids to BLAST against (use CTRL or SHIFT to make multiple selections) and paste in your query sequence. Nucleotide or peptide sequences can be queried.

Isolates

Paste sequence

Include in results table

Parameters

BLASTN word size:
BLASTN scoring:
Hits per isolate:
Flanking length (bp):
Use TBLASTX

Options

Show isolates with no matches
Include seqbin id and start position in FASTA

Restrict included sequences by

Sequence method:
Project:

Action Reset

biosample
accession number
clade
species
serogroup
serovar
isolation year
sequencing year
passage
world region
country
city
host
sample type
source lab
resistance info
province
living area
season
age yr
age mth
sex
profession
travel
infection source
other diseases
ethnicity
reinfection
days with symptoms
clinical conditions
seen rat last two weeks
outcome of infection
comments
capture cgST (capture cgMLST)
cgST (cgMLST)
Ictero (Ictero)
lfb1 (lfb1)
ST (MLST 1)
ST (MLST 2)
ST (MLST 3)
rST (Ribosomal MLST)
genus (Ribosomal MLST)
species (Ribosomal MLST)