Download scheme profiles
Schemes are collections of loci. They may be indexed, in which case they have a primary key field that identifies unique combinations of alleles. The following schemes are indexed.
| Name | Download | Profiles | Description | Curator(s) | Last updated |
|---|---|---|---|---|---|
| AbST | 102 | MLST-style typing of the aerobactin locus | Kat Holt, Federica Palma, Margaret Lam, Chiara Crestani | 2024-09-16 | |
| MLST | 8,594 | The standard 7-gene MLST scheme, initially defined by Diancourt et al. in 2005. | Margaret Lam, Chiara Crestani, Kat Holt, Virginie Passet, Carla Rodrigues, Federica Palma, Marit Andrea Klokkhammer Hetland | 2025-06-30 | |
| CbST | 82 | Colibactin typing scheme using allele combinations from the clbABCDEFGHILMNOP loci. | Kat Holt, Federica Palma, Margaret Lam, Chiara Crestani | 2024-04-16 | |
| Kpn_cgMLST | 0 | This scheme is created for the typing of Klebsiella pneumoniae sensu stricto by Ovsepian et al., 2025. It has 2759 loci. | Armen Ovsepian, Chiara Crestani | ||
| RmST | 387 | rmpA, rmpD & rmpC | Margaret Lam, Chiara Crestani | 2025-02-06 | |
| scgMLST629_S | 56,269 | An update of scheme scgMLST initially identified in Bialek-Davenet et al, 2014. This 629-loci scheme is described in Hennart et al, 2021. | Chiara Crestani, Federica Palma | 2025-06-30 | |
| SL147_cgMLST | 0 | This scheme is created for the typing of Klebsiella pneumoniae SL147 by Ovsepian et al., 2025. It has 854 loci. | Armen Ovsepian, Chiara Crestani | ||
| SL307_cgMLST | 0 | This scheme is created for the typing of Klebsiella pneumoniae SL307 by Ovsepian et al., 2025. It has 976 loci. | Armen Ovsepian, Chiara Crestani | ||
| SmST | 49 | MLST style typing of salmochelin locus | Kat Holt, Federica Palma, Margaret Lam, Chiara Crestani | 2024-04-16 | |
| wzi | 619 | This scheme contains a unique gene, wzi. Profiles numbers are identical to wzi alleles, and some of them are linked to capsular types as defined by phenotypic serotyping. | Carla Rodrigues, Kat Holt, Virginie Passet, Federica Palma, Chiara Crestani | 2025-04-11 | |
| YbST | 607 | Typing scheme for yersiniabactin virulence operon (ybtS ybtX ybtQ ybtP ybtA irp2 irp1 ybtU ybtT ybtE fyuA). | Kat Holt, Federica Palma, Margaret Lam, Chiara Crestani | 2024-09-16 |