Download scheme profiles
Schemes are collections of loci. They may be indexed, in which case they have a primary key field that identifies unique combinations of alleles. The following schemes are indexed.
| Name | Download | Profiles | Description | Curator(s) | Last updated |
|---|---|---|---|---|---|
| AbST | 111 | MLST-style typing of the aerobactin locus | Kat Holt, Federica Palma, Margaret Lam, Chiara Crestani | 2026-01-22 | |
| MLST | 9,578 | The standard 7-gene MLST scheme, initially defined by Diancourt et al. in 2005. | Margaret Lam, Chiara Crestani, Kat Holt, Virginie Passet, Carla Rodrigues, Federica Palma, Marit Andrea Klokkhammer Hetland | 2026-02-05 | |
| CbST | 84 | Colibactin typing scheme using allele combinations from the clbABCDEFGHILMNOP loci. | Kat Holt, Federica Palma, Margaret Lam, Chiara Crestani | 2026-01-22 | |
| RmST | 389 | rmpA, rmpD & rmpC | Margaret Lam, Chiara Crestani | 2026-01-22 | |
| scgMLST629_S | 70,841 | An update of scheme scgMLST initially identified in Bialek-Davenet et al, 2014. This 629-loci scheme is described in Hennart et al, 2022. | Chiara Crestani, Federica Palma | 2026-02-05 | |
| SL147_cgMLST | 0 | This scheme is created for the typing of Klebsiella pneumoniae SL147. It has 853 loci. | Armen Ovsepian, Chiara Crestani | ||
| SL307_cgMLST | 0 | This scheme is created for the typing of Klebsiella pneumoniae SL307. It has 957 loci. | Armen Ovsepian, Chiara Crestani | ||
| SmST | 58 | MLST style typing of salmochelin locus | Kat Holt, Federica Palma, Margaret Lam, Chiara Crestani | 2026-01-22 | |
| wzi | 619 | This scheme contains a unique gene, wzi. Profiles numbers are identical to wzi alleles, and some of them are linked to capsular types as defined by phenotypic serotyping. | Chiara Crestani, Kat Holt, Virginie Passet, Carla Rodrigues, Federica Palma | 2025-04-11 | |
| YbST | 728 | Typing scheme for yersiniabactin virulence operon (ybtS ybtX ybtQ ybtP ybtA irp2 irp1 ybtU ybtT ybtE fyuA). | Kat Holt, Federica Palma, Margaret Lam, Chiara Crestani | 2026-01-28 |