Download scheme profiles
Schemes are collections of loci. They may be indexed, in which case they have a primary key field that identifies unique combinations of alleles. The following schemes are indexed.
| Name | Download | Profiles | Description | Curator(s) | Last updated |
|---|---|---|---|---|---|
| AbST | 99 | MLST-style typing of the aerobactin locus | Margaret Lam, Kat Holt, Federica Palma | 2024-04-16 | |
| MLST | 7,114 | The standard 7-gene MLST scheme, initially defined by Diancourt et al. in 2005. | Margaret Lam, Kat Holt, Radek Izdebski, Marit Andrea Klokkhammer Hetland, Virginie Passet, Carla Rodrigues, Federica Palma, Mélanie Hennart | 2024-04-19 | |
| CbST | 82 | Colibactin typing scheme using allele combinations from the clbABCDEFGHILMNOP loci. | Margaret Lam, Kat Holt, Federica Palma | 2024-04-16 | |
| RmST | 171 | rmpA, rmpD & rmpC | Margaret Lam | 2024-04-16 | |
| scgMLST629_S | 37,962 | An update of scheme scgMLST initially identified in Bialek-Davenet et al, 2014. This 629-loci scheme is described in Hennart et al, 2021. | Federica Palma | 2024-04-17 | |
| SmST | 49 | MLST style typing of salmochelin locus | Margaret Lam, Kat Holt, Federica Palma | 2024-04-16 | |
| wzi | 618 | This scheme contains a unique gene, wzi. Profiles numbers are identical to wzi alleles, and some of them are linked to capsular types as defined by phenotypic serotyping. | Kat Holt, Virginie Passet, Carla Rodrigues, Federica Palma | 2023-09-04 | |
| YbST | 600 | Typing scheme for yersiniabactin virulence operon (ybtS ybtX ybtQ ybtP ybtA irp2 irp1 ybtU ybtT ybtE fyuA). | Margaret Lam, Kat Holt, Federica Palma | 2024-04-16 |