Download scheme profiles
Schemes are collections of loci. They may be indexed, in which case they have a primary key field that identifies unique combinations of alleles. The following schemes are indexed.
| Name | Download | Profiles | Description | Curator(s) | Last updated |
|---|---|---|---|---|---|
| AbST | 99 | MLST-style typing of the aerobactin locus | Kat Holt, Federica Palma, Margaret Lam | 2022-09-13 | |
| MLST | 6,284 | The standard 7-gene MLST scheme, initially defined by Diancourt et al. in 2005. | Virginie Passet, Radek Izdebski, Carla Rodrigues, Mélanie Hennart, Kat Holt, Federica Palma, Marit Andrea Klokkhammer Hetland, Margaret Lam | 2022-12-05 | |
| CbST | 82 | Colibactin typing scheme using allele combinations from the clbABCDEFGHILMNOP loci. | Kat Holt, Federica Palma, Margaret Lam | 2022-07-27 | |
| RmST | 171 | rmpA, rmpD & rmpC | Margaret Lam | 2022-03-15 | |
| scgMLST629_S | 16,528 | An update of scheme scgMLST initially identified in Bialek-Davenet et al, 2014. This 629-loci scheme is described in Hennart et al, 2021. | Federica Palma | 2022-12-08 | |
| SmST | 49 | MLST style typing of salmochelin locus | Kat Holt, Federica Palma, Margaret Lam | 2022-03-15 | |
| wzi | 617 | This scheme contains a unique gene, wzi. Profiles numbers are identical to wzi alleles, and some of them are linked to capsular types as defined by phenotypic serotyping. | Carla Rodrigues, Kat Holt, Virginie Passet, Federica Palma | 2022-07-28 | |
| YbST | 599 | Typing scheme for yersiniabactin virulence operon (ybtS ybtX ybtQ ybtP ybtA irp2 irp1 ybtU ybtT ybtE fyuA). | Kat Holt, Federica Palma, Margaret Lam | 2022-07-18 |