Scheme information - CbST

Colibactin typing scheme using allele combinations from the clbABCDEFGHILMNOP loci.

References

• Lam MMC, Wick RR, Wyres KL, Gorrie CL, Judd LM, Jenney AWJ, Brisse S, Holt KE (2018). Genetic diversity, mobilisation and spread of the yersiniabactin-encoding mobile element ICEKp in Klebsiella pneumoniae populations. Microb Genom 4:

Curators

This scheme is curated by:

• Margaret Lam, Monash University
• Kat Holt, Melbourne U
• Federica Palma, Institut Pasteur, Paris, France

Fields

The primary key field indexes unique combinations of alleles at the member loci.

• ST Primary key
  • Colibactin sequence type
• clb_lineage

Loci

This scheme consists of alleles from 15 loci.

• clbA
• clbB
• clbC
• clbD
• clbE
• clbF
• clbG
• clbH
• clbI
• clbL
• clbM
• clbN
• clbO
• clbP
• clbQ

Profiles

This scheme has 82 profiles defined.

• Profile update history