Scheme information - SmST

MLST style typing of salmochelin locus

References

• Lam MMC, Wyres KL, Judd LM, Wick RR, Jenney A, Brisse S, Holt KE (2018). Tracking key virulence loci encoding aerobactin and salmochelin siderophore synthesis in Klebsiella pneumoniae. Genome Med 10:77

Fields

The primary key field indexes unique combinations of alleles at the member loci.

• ST Primary key
  • Salmochelin sequence type
• iro_lineage

Loci

This scheme consists of alleles from 4 loci.

• iroB
• iroC
• iroD
• iroN