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378

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378 records returned (1 - 25 displayed). Click the hyperlinks for detailed information.

Isolate fields											MLST								Ribosomal MLST		scgMLST629_S					AbST		CbST		RmST		SmST		YbST
id	isolate	aliases	taxonomic designation	phylogroup from ST	QC status	source type	host	source details	infection	K typing method	gapA	infB	mdh	pgi	phoE	rpoB	tonB	ST	rST	species	scgST	LINcode	Phylogroup	Sublineage	Clonal group	ST	iuc lineage	ST	clb lineage	ST	rmp lineage	ST	iro lineage	ST	lineage ICE
366	CIP 52.235	CIP 52.235; SB3269	K. pneumoniae	Mixed: Kp1 (6 loci), Kp4 (1 locus)	0100	Unknown	Unknown	Unknown		Antiserum	2	6	1	5	11	1	15	43	18960	Klebsiella pneumoniae	16530	0_0_83_6_0_0_0_0_0_0	Kp1	SL43	CG12447
396	A3021	A3021; SB3926	K. pneumoniae	Kp1 (7 loci)	0100	Human	Human	Liver pus	Liver abscess		2	1	1	1	9	4	12	23								17	iuc 1			32	rmp 3; ICEKp1
407	2-2	2-2; SB611	K. pneumoniae	Kp1 (7 loci)	0120	Environment	Environment	Water			7	1	2	2	1	1	25	2668	153861	Klebsiella pneumoniae	16531	0_0_1172_2_0_0_0_0_0_0	Kp1	SL11027	CG12448
1506	xz084		K. pneumoniae		0021	Human	human	blood	hospital infection		2	245	1	1	9	1	6	5923	209365	Klebsiella pneumoniae	11229	0_0_94_1_8_0_0_0_0_0	Kp1	SL252	CG252
1521	BD-DU	SB4565	K. pneumoniae	Kp1 (7 loci)	0100	Human	Human	Liver pus	Liver abscess	PCR	2	1	1	1	19	4	12	57	19197	Klebsiella pneumoniae										26,38	rmp 1; KpVP-1
1526	KpS13	Kp FLO; SB3434	K. pneumoniae	Kp1 (7 loci)	0020	Human	Human	Blood	Sepsis	C-pattern	1	6	1	1	1	1	1	14	19208	Klebsiella pneumoniae	9702	0_0_1_1_39_0_0_0_0_0	Kp1	SL14	CG14	1	iuc 1							178	ybt 9; ICEKp3
1536	T6	SB4537	K. pneumoniae	Kp1 (7 loci)	0100	Human	Human	Ascitic fluid	Post-perforation peritonitis		43	1	2	1	10	4	13	375	18985	Klebsiella pneumoniae	16532	0_0_390_0_13_0_0_0_0_0	Kp1	SL375	CG375
1545	MS 92-3		K. pneumoniae	Kp1 (7 loci)	0100	Human	Human	Gut			2	1	1	6	7	1	12	45	19210	Klebsiella pneumoniae	5110	0_0_158_8_14_0_0_0_0_0	Kp1	SL45	CG45
1551	KpO3210		K. pneumoniae		0100	Human	Human	Blood				1	62				110
1554	07A044	SB30	K. quasipneumoniae subsp. similipneumoniae	Kp4 (7 loci)	0002	Human	Human	Blood			18	22	64	22	174	13	213	1215	52201	Klebsiella quasipneumoniae	14,5015	2_1_22_0_0_0_0_0_0_0	Kp4	SL1215	CG1215
1642	ATCC BAA-2146		K. pneumoniae	Kp1 (7 loci)	0100	Human	Human	Unknown			3	3	1	1	1	1	4	11	31218	Klebsiella pneumoniae
1677	KpMDU1		K. pneumoniae	Kp1 (7 loci)	0100	Human	Human	Unknown			3	3	1	1	1	1	79	258																301	ybt 13; ICEKp2
1680	B5055	CIP 52.145	K. pneumoniae		0100	Unknown	Unknown	Unknown		Antiserum	2		2	1	10	1																22	iro 2
1681	ST258-490		K. pneumoniae	Kp1 (7 loci)	0100	Human	Human	Urine			3	3	1	1	1	1	79	258	31218	Klebsiella pneumoniae	4397	0_0_105_6_0_0_17_53_6_0	Kp1	SL258	CG258
1710	CH137	SB3464	K. pneumoniae subsp. ozaenae	Kp1 (7 loci)	x100	Human	Human	Respiratory	Laryngeal scleroma		10	6	1	9	12	4	29	90
1712	EGD-HP19		K. pneumoniae	Kp1 (7 loci)	0100	Environment	Environment	Nitro-aromatics containing industrial waste water			2	1	11	4	9	4	13	1377
1835	09-370B	5235_5_12; SKP000858	K. pneumoniae		0100	Human	Human	Unknown			3	3	1	1	1	1
2895	08-109P		K. variicola		0100	Human	Human	Pus	NA			28	21	27		22
2902	09-2801m		K. pneumoniae		0022	Human	Human	Blood	Human_invasive		2	1	2	1	4	4														49	rmp 3; ICEKp1
2904	09-2985m		K. pneumoniae		0100	Human	Human	Blood	Human_invasive		2	1	1	1	10	4			19000	Klebsiella pneumoniae										50	rmp 3; ICEKp1
2905	09-309B		K. pneumoniae		0100	Human	Human	Sputum	Human_infection		2	3	1	1	10	1
2907	09-341B		K. pneumoniae		0100	Human	Human	Sputum	Human_infection		3	4	6	1	7	4			19272	Klebsiella pneumoniae
2908	09-400B		K. pneumoniae	Kp1 (7 loci)	0100	Human	Human	Sputum	Human_infection		2	1	5	1	17	4	42	111
2909	09-406B		K. pneumoniae		0100	Human	Human	Sputum	Human_infection		2	6	1	3	26	1			18944	Klebsiella pneumoniae
2910	09-439B		K. quasipneumoniae subsp. quasipneumoniae		x120	Human	Human	Sputum	NA			22	18	61	11	13	51

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belonging to any project
not belonging to any project
Barbier et al_ApplEnvironMicrobiol_2020
Bialek et al 2014_EID
Biedrzycka et al 2021_JAC
BIRDY_Madagascar
Bowers et al 2015_PlosOne
CG258-TP
Dataset1_ST147_SARA_cours
Dataset2_CG147_SARA_cours
Ellington et al. 2019
Ezzat_2021
Garcia-Fierro et al 2022_JAC
Gorrie et al. 2017
Hennart_et_al_2022_full_collection
Hennart et al. 2022_MBE
Huynh et al 2020 Gut Microbes
Isolates Excluded (failed QC)
Isolates Exlcuded (contigs size)
Martin et al 2021_PNAS
Musicha et al. 2019
OkomoEtAl2020
Outbreaks
Plasmids
project_RI_JG_SB
Public isolates
published_genomes
Raffelsberger et al 2021_GutMicrobes
Rodrigues et al 2022_MGen
Rodrigues et al 2022_MSpectrum
Rollin et al 2022_IJID
SPARK project
ST258_ST512_ST1199
Test cg634 nomemclature