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Isolate count

496

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Genome count

496

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496 records returned (1 - 25 displayed). Click the hyperlinks for detailed information.

Isolate fields											MLST								Ribosomal MLST		scgMLST629_S					AbST		CbST		RmST		SmST		YbST
id	isolate	aliases	taxonomic designation	phylogroup from ST	QC status	source type	host	source details	infection	K typing method	gapA	infB	mdh	pgi	phoE	rpoB	tonB	ST	rST	species	scgST	LINcode	Phylogroup	Sublineage	Clonal group	ST	iuc lineage	ST	clb lineage	ST	rmp lineage	ST	iro lineage	ST	lineage ICE
4418	SB5372	748	K. pneumoniae	Kp1 (7 loci)	0000		pregnant woman	Fecal sample	carriage		4	1	1	1	1	5	6	8	43480	Klebsiella pneumoniae	13102	0_0_47_0_7_0_0_0_1_0	Kp1	SL8	CG8
4419	SB5373	765	K. variicola subsp. variicola	Kp3 (7 loci)	0000		pregnant woman	Fecal sample	carriage		16	18	43	49	47	30	71	2462	44011	Klebsiella variicola	13103	1_0_2_0_1_0_0_0_0_0	Kp3	SL2462	CG2462
4421	SB5375	785	K. variicola subsp. variicola	Kp3 (7 loci)	0000		pregnant woman	Fecal sample	carriage		16	18	21	38	47	17	67	2463	200912	Klebsiella variicola	13104	1_0_459_0_0_0_0_0_0_0	Kp3	SL10913	CG11643
4422	SB5376	789	K. pneumoniae	Kp1 (7 loci)	0000		pregnant woman	Fecal sample	carriage		4	3	1	2	1	1	62	1621	43721	Klebsiella pneumoniae	13105	0_0_1049_0_0_0_0_0_1_0	Kp1	SL10914	CG11644
4423	SB5377	790	K. variicola subsp. variicola	Kp3 (7 loci)	0000		pregnant woman	Fecal sample	carriage		16	24	21	27	54	17	71	2464	200846	Klebsiella variicola	13106	1_0_320_0_0_0_0_0_0_0	Kp3	SL10915	CG11645
4424	SB5378	799	K. pneumoniae	Kp1 (7 loci)	0000		pregnant woman	Fecal sample	carriage		4	3	1	2	1	1	62	1621	43721	Klebsiella pneumoniae	13107	0_0_1049_0_0_0_0_0_0_0	Kp1	SL10914	CG11644
4425	SB5379	806	K. variicola subsp. variicola	Kp3 (7 loci)	0000		pregnant woman	Fecal sample	carriage		16	62	21	27	55	22	75	906	95537	Klebsiella variicola	13108	1_0_15_4_2_0_0_0_0_0	Kp3	SL595	CG906
4426	SB5380	807	K. pneumoniae	Kp1 (7 loci)	0000		pregnant woman	Fecal sample	carriage		2	6	17	1	20	10	25	70	19394	Klebsiella pneumoniae	13109	0_0_211_0_0_3_0_0_0_0	Kp1	SL70	CG70
4427	SB5381	808	K. variicola subsp. variicola	Kp3 (7 loci)	0000		pregnant woman	Fecal sample	carriage		16	18	21	27	153	40	85	925	19306	Klebsiella variicola	13110	1_0_18_5_0_0_0_0_0_0	Kp3	SL925	CG11646
4428	SB5382	809	K. pneumoniae	Kp1 (7 loci)	0000		pregnant woman	Fecal sample	carriage		4	3	1	2	1	1	62	1621	43721	Klebsiella pneumoniae	13105	0_0_1049_0_0_0_0_0_1_0	Kp1	SL10914	CG11644
4429	SB5383	810	K. pneumoniae	Kp1 (7 loci)	0000		pregnant woman	Fecal sample	carriage		51	1	5	1	9	4	13	491	43763	Klebsiella pneumoniae	13111,13220	0_0_6_2_1_0_0_0_0_0	Kp1	SL491	CG11038
4430	SB5384	811	K. pneumoniae	Kp1 (7 loci)	0000		pregnant woman	Fecal sample	carriage		2	7	70	1	1	4	4	1429	139265	Klebsiella pneumoniae	13112,13131,13167,21196	0_0_1140_0_0_0_0_0_1_0	Kp1	SL10916	CG11647
4431	SB5385	812	K. pneumoniae	Kp1 (7 loci)	0000		pregnant woman	Fecal sample	carriage		2	6	10	82	20	10	25	1873	127251	Klebsiella pneumoniae	13113	0_0_910_0_1_0_0_0_0_0	Kp1	SL10783	CG11422
4432	SB5386	813	K. variicola subsp. variicola	Kp3 (7 loci)	0000		pregnant woman	Fecal sample	carriage		16	18	21	27	137	22	103	2465	200810	Klebsiella variicola	13114	1_0_240_1_0_0_0_0_0_0	Kp3	SL10580	CG11648
4433	SB5387	814	K. variicola subsp. tropica	Mixed: Kp5 (6 loci), Kp5/Kp3 (1 locus)	0000		pregnant woman	Fecal sample	carriage		139	119	197	164	276	83	354	2466			25	1_1_8_0_0_0_0_0_0_0	Kp5	SL2466	CG2466
4434	SB5388	815	K. variicola subsp. variicola	Kp3 (7 loci)	0000		pregnant woman	Fecal sample	carriage		16	62	21	27	55	22	75	906	95537	Klebsiella variicola	13115	1_0_15_4_2_0_0_0_1_0	Kp3	SL595	CG906
4435	SB5389	816	K. pneumoniae	Kp1 (7 loci)	0000		pregnant woman	Fecal sample	carriage		14	1	2	1	7	4	182	873	43298	Klebsiella pneumoniae	13116	0_0_160_0_7_0_0_0_1_0	Kp1	SL873	CG873
4436	SB5390	817	K. pneumoniae	Kp1 (7 loci)	0000		pregnant woman	Fecal sample	carriage		2	1	5	1	17	4	42	111	19270	Klebsiella pneumoniae	13117	0_0_221_1_3_1_0_0_0_0	Kp1	SL111	CG111
4437	SB5391	818	K. pneumoniae	Kp1 (7 loci)	0000		pregnant woman	Fecal sample	carriage		4	4	1	1	7	4	10	1	19003	Klebsiella pneumoniae	13118	0_0_126_0_7_0_0_0_0_0	Kp1	SL1	CG1
4438	SB5392	819	K. pneumoniae	Kp1 (7 loci)	0000		pregnant woman	Fecal sample	carriage		2	3	1	4	6	2	38	2467	139258	Klebsiella pneumoniae	13119	0_0_501_3_0_0_0_0_0_0	Kp1	SL10331	CG11649
4439	SB5393	821	K. pneumoniae	Kp1 (7 loci)	0000		pregnant woman	Fecal sample	carriage		14	1	2	1	7	4	182	873	43298	Klebsiella pneumoniae	13120	0_0_160_0_7_0_0_0_0_0	Kp1	SL873	CG873
4441	SB5395	823	K. pneumoniae	Kp1 (7 loci)	0000		pregnant woman	Fecal sample	carriage		10	3	6	1	9	7	4	2177	139262	Klebsiella pneumoniae	13121	0_0_13_39_0_0_0_0_1_0	Kp1	SL34	CG11650
4442	SB5396	824	K. variicola subsp. variicola	Kp3 (7 loci)	0000		pregnant woman	Fecal sample	carriage		16	18	21	49	176	22	152	2468	200898	Klebsiella variicola	13122	1_0_428_0_0_0_0_0_0_0	Kp3	SL10917	CG11651
4443	SB5397	825	K. pneumoniae	Kp1 (7 loci)	0000		pregnant woman	Fecal sample	carriage		2	1	11	1	1	1	13	337	139259	Klebsiella pneumoniae	13123	0_0_276_0_1_0_0_1_1_0	Kp1	SL10010	CG10049
4444	SB5398	826	K. pneumoniae	Kp1 (7 loci)	0000		pregnant woman	Fecal sample	carriage		2	9	2	1	13	1	16	37	19228	Klebsiella pneumoniae	13124	0_0_109_1_57_0_0_0_0_0	Kp1	SL37	CG37

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belonging to any project
not belonging to any project
Barbier et al_ApplEnvironMicrobiol_2020
Bialek et al 2014_EID
Biedrzycka et al 2021_JAC
BIRDY_Madagascar
Bowers et al 2015_PlosOne
CG258-TP
Dataset1_ST147_SARA_cours
Dataset2_CG147_SARA_cours
Ellington et al. 2019
Ezzat_2021
Garcia-Fierro et al 2022_JAC
Gorrie et al. 2017
Hennart_et_al_2022_full_collection
Hennart et al. 2022_MBE
Huynh et al 2020 Gut Microbes
Isolates Excluded (failed QC)
Isolates Exlcuded (contigs size)
Martin et al 2021_PNAS
Musicha et al. 2019
OkomoEtAl2020
Outbreaks
Plasmids
project_RI_JG_SB
Public isolates
published_genomes
Raffelsberger et al 2021_GutMicrobes
Rodrigues et al 2022_MGen
Rodrigues et al 2022_MSpectrum
Rollin et al 2022_IJID
SPARK project
ST258_ST512_ST1199
Test cg634 nomemclature