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Allele designations/scheme field values
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Isolate count

160

0 [month]

Genome count

160

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160 records returned (1 - 25 displayed). Click the hyperlinks for detailed information.

Isolate fields											MLST								Ribosomal MLST		scgMLST629_S					AbST		CbST		RmST		SmST		YbST
id	isolate	aliases	taxonomic designation	phylogroup from ST	QC status	source type	host	source details	infection	K typing method	gapA	infB	mdh	pgi	phoE	rpoB	tonB	ST	rST	species	scgST	LINcode	Phylogroup	Sublineage	Clonal group	ST	iuc lineage	ST	clb lineage	ST	rmp lineage	ST	iro lineage	ST	lineage ICE
25194	ERR304796	SAMEA1920555	K. pneumoniae		0000	Human	human	Unknown			2	1	1	1	4	4	4	17	19217	Klebsiella pneumoniae	18310	0_0_22_24_6_0_2_0_0_0	Kp1	SL17	CG17									131	ybt 14; ICEKp5?
25196	ERR311562	SAMEA2053995	K. pneumoniae		0000	Human	human	Unknown			1	1	1	1	1	1	1	15	19202	Klebsiella pneumoniae	18312	0_0_0_0_2_0_0_15_0_4	Kp1	SL15	CG15									17	ybt 10; ICEKp4
26729	ERR314532	SAMEA2054094	K. pneumoniae		0000	Human	Human	Unknown			2	1	2	1	10	4	46	280	18987	Klebsiella pneumoniae	19357	0_0_230_0_4_1_3_0_1_0	Kp1	SL280	CG280
26766	ERR314403	SAMEA2053998	K. pneumoniae		0000	Human	Human	Unknown			2	3	2	1	1	4	18	105	19392	Klebsiella pneumoniae	19394	0_0_220_7_25_0_0_0_0_0	Kp1	SL152	CG105
26776	ERR314500	SAMEA2054934	K. pneumoniae		0000	Human	Human	Unknown			2	1	2	1	10	4	46	280	18987	Klebsiella pneumoniae	19404	0_0_230_0_4_1_3_0_0_0	Kp1	SL280	CG280
26803	ERR304797	SAMEA1920556	K. pneumoniae		0000	Human	Human	Unknown			2	3	1	1	9	10	4	1380	19012	Klebsiella pneumoniae	19429	0_0_34_3_0_0_0_0_0_0	Kp1	SL1380	CG1380
26828	ERR304788	SAMEA1920548	K. pneumoniae		0000	Human	Human	Unknown			4	1	2	1	1	4	56	6520	19130	Klebsiella pneumoniae	19450	0_0_1414_0_0_0_0_0_0_0	Kp1	SL11465	CG12587
26833	ERR314565	SAMEA2053117	K. pneumoniae		0000	Human	Human	Unknown			3	1	2	1	1	1	4	134	19233	Klebsiella pneumoniae	19454	0_0_233_0_0_5_0_0_0_0	Kp1	SL134	CG134
26842	ERR257634	SAMEA1713021	K. pneumoniae		0000	Human	Human	Unknown			3	1	1	1	9	4	135	551	43270	Klebsiella pneumoniae	19463	0_0_406_0_12_0_0_0_0_0	Kp1	SL551	CG551
26844	ERR314562	SAMEA2054104	K. pneumoniae		0000	Human	Human	Unknown			3	1	1	3	4	28	39	188	19143	Klebsiella pneumoniae	19465	0_0_179_0_14_0_0_0_0_0	Kp1	SL188	CG188
26861	ERR304794	SAMEA1920553	K. pneumoniae		0000	Human	Human	Unknown			2	1	1	1	10	4	13	25	19000	Klebsiella pneumoniae	19482	0_0_388_1_2_5_0_0_0_0	Kp1	SL25	CG25									62	ybt 6; ICEKp5
26871	ERR314401	SAMEA2054825	K. pneumoniae		0000	Human	Human	Unknown			2	1	38	37	10	4	18	215	19134	Klebsiella pneumoniae	19490	0_0_296_0_1_0_2_4_0_0	Kp1	SL215	CG215
26872	ERR304799	SAMEA1920560	K. pneumoniae		0000	Human	Human	Unknown			2	1	1	1	4	4	4	17	19217	Klebsiella pneumoniae	19491	0_0_22_24_6_0_2_0_1_0	Kp1	SL17	CG17									131	ybt 14; ICEKp5?
26933	ERR257682	SAMEA1713133	K. pneumoniae		0000	Human	Human	Unknown			2	9	1	1	4	4	129	1408	43362	Klebsiella pneumoniae	19543	0_0_192_3_0_0_0_0_0_0	Kp1	SL1408	CG1408
26951	ERR314547	SAMEA2054099	K. pneumoniae		0000	Human	Human	Unknown			4	1	2	52	1	1	7	307	19275	Klebsiella pneumoniae	19559,37438	0_0_369_0_0_0_0_0_221_0	Kp1	SL307	CG307
26963	ERR314431	SAMEA2054835	K. pneumoniae		0000	Human	Human	Unknown			1	1	1	1	1	1	1	15	19202	Klebsiella pneumoniae	19570	0_0_0_0_2_0_0_212_0_0	Kp1	SL15	CG15
26996	ERR314522	SAMEA2053941	K. pneumoniae		0000	Human	Human	Unknown			2	6	1	3	26	1	77	231	19013	Klebsiella pneumoniae	19598	0_0_88_0_0_11_0_0_0_0	Kp1	SL231	CG231
27002	ERR314408	SAMEA2053794	K. pneumoniae		0000	Human	Human	Unknown			2	6	1	3	26	1	77	231	19013	Klebsiella pneumoniae	19598	0_0_88_0_0_11_0_0_0_0	Kp1	SL231	CG231
27009	ERR314417	SAMEA2053797	K. pneumoniae		0000	Human	Human	Unknown			1	1	1	1	1	1	1	15	19202	Klebsiella pneumoniae	19609	0_0_0_0_2_0_0_189_0_0	Kp1	SL15	CG15
27026	ERR314412	SAMEA2054001	K. pneumoniae		0000	Human	Human	Unknown			2	1	1	1	10	4	13	25	19000	Klebsiella pneumoniae	19626	0_0_388_0_0_0_0_4_0_0	Kp1	SL25	CG10224
27028	ERR314459	SAMEA2053865	K. pneumoniae		0000	Human	Human	Unknown			4	1	2	52	1	1	7	307	19275	Klebsiella pneumoniae	19559,37438	0_0_369_0_0_0_0_0_221_0	Kp1	SL307	CG307
27035	ERR314407	SAMEA2054827	K. pneumoniae		0000	Human	Human	Unknown			2	1	2	1	1	4	12	161	19135	Klebsiella pneumoniae	19634	0_0_348_3_0_0_0_1_0_0	Kp1	SL1017	CG12596
27040	ERR314466	SAMEA2054047	K. pneumoniae		0000	Human	Human	Unknown			2	5	2	2	7	1	10	48	19218	Klebsiella pneumoniae	19639	0_0_147_1_0_6_1_0_0_0	Kp1	SL48	CG48									189	ybt 9; ICEKp3
27071	ERR311480	SAMEA2053714	K. pneumoniae		0000	Human	Human	Unknown			4	4	1	1	7	4	10	1	19003	Klebsiella pneumoniae	19667	0_0_126_0_0_5_0_0_0_0	Kp1	SL1	CG1
27079	ERR314550	SAMEA2054100	K. pneumoniae		0000	Human	Human	Unknown			3	9	47	1	13	1	16	353	19142	Klebsiella pneumoniae	19675	0_0_111_0_18_0_0_0_0_0	Kp1	SL353	CG353									84	ybt 10; ICEKp4

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belonging to any project
not belonging to any project
Barbier et al_ApplEnvironMicrobiol_2020
Bialek et al 2014_EID
Biedrzycka et al 2021_JAC
BIRDY_Madagascar
Bowers et al 2015_PlosOne
CG258-TP
Dataset1_ST147_SARA_cours
Dataset2_CG147_SARA_cours
Ellington et al. 2019
Ezzat_2021
Garcia-Fierro et al 2022_JAC
Gorrie et al. 2017
Hennart_et_al_2022_full_collection
Hennart et al. 2022_MBE
Huynh et al 2020 Gut Microbes
Isolates Excluded (failed QC)
Isolates Exlcuded (contigs size)
Martin et al 2021_PNAS
Musicha et al. 2019
OkomoEtAl2020
Outbreaks
Plasmids
project_RI_JG_SB
Public isolates
published_genomes
Raffelsberger et al 2021_GutMicrobes
Rodrigues et al 2022_MGen
Rodrigues et al 2022_MSpectrum
Rollin et al 2022_IJID
SPARK project
ST258_ST512_ST1199
Test cg634 nomemclature