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167

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Genome count

167

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167 records returned (1 - 25 displayed). Click the hyperlinks for detailed information.

Isolate fields											MLST								Ribosomal MLST		scgMLST629_S					AbST		CbST		RmST		SmST		YbST
id	isolate	aliases	taxonomic designation	phylogroup from ST	QC status	source type	host	source details	infection	K typing method	gapA	infB	mdh	pgi	phoE	rpoB	tonB	ST	rST	species	scgST	LINcode	Phylogroup	Sublineage	Clonal group	ST	iuc lineage	ST	clb lineage	ST	rmp lineage	ST	iro lineage	ST	lineage ICE
6003	INF114		K. variicola	Kp3 (7 loci)		Human	Human	Unknown			16	58	30	38	229	22	45	2989	43718	Klebsiella variicola	37642	1_0_534_0_1_0_0_0_0_0	Kp3	SL11852	CG13426
6008	KSB1_8E		K. variicola	Kp3 (7 loci)		Human	Human	Unknown			16	18	21	27	47	22	67	2994	43760	Klebsiella variicola	37643	1_0_549_0_0_0_0_0_0_0	Kp3	SL11889	CG13466
6009	KSB2_1D		K. variicola	Kp3 (7 loci)		Human	Human	Unknown			28	24	21	38	312	22	281	2995			37644	1_0_544_0_0_0_0_0_0_0	Kp3	SL11890	CG13467
6011	KSB1_9B		K. variicola	Kp3 (7 loci)		Human	Human	Unknown			16	18	217	27	47	22	67	2996	43782	Klebsiella variicola	37645	1_0_541_0_0_0_0_0_0_0	Kp3	SL11891	CG13468
6013	INF065		K. pneumoniae	Kp1 (7 loci)		Human	Human	Unknown			2	1	218	1	7	8	24	2998	43825	Klebsiella pneumoniae	37646	0_0_1524_0_0_0_0_0_0_0	Kp1	SL11892	CG13469									65	ybt 4; plasmid
6143	INF280		K. pneumoniae	Kp1 (7 loci)		Human	Human	Tissue	Soft tissue		2	6	1	3	10	1	34	3055	43993	Klebsiella pneumoniae	37647	0_0_1519_0_0_0_0_0_0_0	Kp1	SL11893	CG13470
6146	INF324		K. pneumoniae	Kp1 (7 loci)		Human	Human	Urine	UTI		2	6	222	1	140	25	19	3058	43757	Klebsiella pneumoniae	37648	0_0_1525_0_0_0_0_0_0_0	Kp1	SL11894	CG13471
6148	INF022		K. variicola	Mixed: Kp3 (6 loci), Kp1 (1 locus)		Human	Human	Urine	UTI		2	24	21	27	44	22	85	3060	43694	Klebsiella variicola	37649	1_0_535_0_0_0_0_0_0_0	Kp3	SL11895	CG13472
6152	INF107		K. pneumoniae	Kp1 (7 loci)		Human	Human	Urine	UTI		3	20	2	1	1	4	18	3064	43715	Klebsiella pneumoniae	37650	0_0_1518_0_0_0_0_0_0_0	Kp1	SL11896	CG13473
6154	INF131		K. pneumoniae	Kp1 (7 loci)		Human	Human	Urine	UTI		4	1	1	1	7	1	4	3066	43988	Klebsiella pneumoniae	37651	0_0_1521_0_0_0_0_0_0_0	Kp1	SL11897	CG13474
6159	INF052		K. pneumoniae	Kp1 (7 loci)		Human	Human	Tissue	Soft tissue		4	3	1	1	9	4	14	3071			37578	0_0_1514_0_0_0_0_0_0_0	Kp1	SL11849	CG13422
6168	INF058		K. variicola	Kp3 (7 loci)		Human	Human	Urine	UTI		16	18	21	27	155	22	417	3076	43728	Klebsiella variicola	37652	1_0_550_0_0_0_0_0_0_0	Kp3	SL11898	CG13475
6169	INF047		K. variicola	Mixed: Kp3 (6 loci), Kp5 (1 locus)		Human	Human	Urine	UTI		16	18	21	27	203	22	67	3077	43820	Klebsiella variicola	37653	1_0_547_0_0_0_0_0_0_0	Kp3	SL11899	CG13476
6170	INF267		K. variicola	Kp3 (7 loci)		Human	Human	Blood	Disseminated		16	18	21	33	323	40	416	3078			37654	1_0_546_0_0_0_0_0_0_0	Kp3	SL11900	CG13477
6171	INF216		K. variicola	Kp3 (7 loci)		Human	Human	Urine	UTI		16	18	21	194	53	17	75	3079	43840	Klebsiella variicola	37655	1_0_537_0_0_0_0_0_0_0	Kp3	SL11901	CG13478
6174	INF287		K. variicola	Kp3 (7 loci)		Human	Human	Urine	UTI		16	24	21	27	42	17	67	3082	43744	Klebsiella variicola	37656	1_0_548_0_0_0_0_0_0_0	Kp3	SL11902	CG13479
6175	INF189		K. variicola	Kp3 (7 loci)		Human	Human	Urine	UTI		16	24	21	27	53	22	67	3083			37657	1_0_540_0_0_0_0_0_0_0	Kp3	SL11903	CG13480
6177	INF349		K. variicola	Kp3 (7 loci)		Human	Human	Bronchoalveolar lavage	Pneumonia		16	24	21	44	321	22	67	3085	43764	Klebsiella variicola	37527	1_0_527_0_0_0_0_0_0_0	Kp3	SL11845	CG13412
6181	INF330		K. variicola	Kp3 (7 loci)		Human	Human	Sputum	Pneumonia		16	32	21	192	47	22	67	3089	43761	Klebsiella variicola	37526	1_0_529_0_0_0_0_0_0_0	Kp3	SL11844	CG13411
6183	INF312		K. variicola	Kp3 (7 loci)		Human	Human	Blood	Disseminated		16	58	30	38	229	22	45	2989	58573	Klebsiella variicola	37594	1_0_534_0_0_0_0_0_0_0	Kp3	SL11852	CG13426
6184	INF089		K. quasipneumoniae subsp. similipneumoniae	Kp2 (7 loci)		Human	Human	Urine	UTI		17	19	39	39	202	21	126	3091	43986	Klebsiella quasipneumoniae	37658	2_0_194_0_0_0_0_0_0_0	Kp2	SL11904	CG13481
6185	INF291		K. quasipneumoniae subsp. quasipneumoniae	Kp4 (7 loci)		Human	Human	Other swab	Other		18	22	18	16	115	13	192	3092	43747	Klebsiella quasipneumoniae	37521	2_1_254_0_0_0_0_0_0_0	Kp4	SL11843	CG13409
6187	INF152		K. variicola	Kp3 (7 loci)		Human	Human	Urine	UTI		28	98	21	40	38	17	251	3094	43733	Klebsiella variicola	37659	1_0_539_0_0_0_0_0_0_0	Kp3	SL11905	CG13482
42384	SRR5082481	AH0297_C4PNMANXX_CGAGGCTG-AAGGAGTA_L006; SAMN06112201	K. pneumoniae		0000	Human	Human	Rectal swab			2	1	1	1	7	4	61	3040	58572	Klebsiella pneumoniae	31134	0_0_51_2_0_0_0_0_0_0	Kp1	SL1738	CG1738
42524	SRR5082475	AH0148_C4PNMANXX_TAGGCATG-AAGGAGTA_L006; SAMN06112198	K. pneumoniae		0000	Human	Human	Rectal swab			15	1	1	18	1	1	4	116	58578	Klebsiella pneumoniae	31263	0_0_398_0_11_0_0_0_0_0	Kp1	SL116	CG116

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belonging to any project
not belonging to any project
Barbier et al_ApplEnvironMicrobiol_2020
Bialek et al 2014_EID
Biedrzycka et al 2021_JAC
BIRDY_Madagascar
Bowers et al 2015_PlosOne
CG258-TP
Dataset1_ST147_SARA_cours
Dataset2_CG147_SARA_cours
Ellington et al. 2019
Ezzat_2021
Garcia-Fierro et al 2022_JAC
Gorrie et al. 2017
Hennart_et_al_2022_full_collection
Hennart et al. 2022_MBE
Huynh et al 2020 Gut Microbes
Isolates Excluded (failed QC)
Isolates Exlcuded (contigs size)
Martin et al 2021_PNAS
Musicha et al. 2019
OkomoEtAl2020
Outbreaks
Plasmids
project_RI_JG_SB
Public isolates
published_genomes
Raffelsberger et al 2021_GutMicrobes
Rodrigues et al 2022_MGen
Rodrigues et al 2022_MSpectrum
Rollin et al 2022_IJID
SPARK project
ST258_ST512_ST1199
Test cg634 nomemclature