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Isolate count

7,388

0 [month]

Genome count

7,388

0 [month]

7,388 records returned (1 - 25 displayed). Click the hyperlinks for detailed information.

Isolate fields											MLST								Ribosomal MLST		scgMLST629_S					AbST		CbST		RmST		SmST		YbST
id	isolate	aliases	taxonomic designation	phylogroup from ST	QC status	source type	host	source details	infection	K typing method	gapA	infB	mdh	pgi	phoE	rpoB	tonB	ST	rST	species	scgST	LINcode	Phylogroup	Sublineage	Clonal group	ST	iuc lineage	ST	clb lineage	ST	rmp lineage	ST	iro lineage	ST	lineage ICE
46765	GCA_900005395.1		K. pneumoniae	Kp1 (7 loci)		Unknown	Unknown	Unknown			2	1	2	17	27	1	39	107	19164	Klebsiella pneumoniae	42	0_0_80_7_0_0_0_0_0_0	Kp1	SL107	CG10116
46766	GCA_900004985.1		K. variicola subsp. variicola	Kp3 (7 loci)		Unknown	Unknown	Unknown			16	18	21	27	47	22	200	3570	122674	Klebsiella variicola	43	1_0_71_1_0_0_0_0_0_0	Kp3	SL344	CG3570
46767	GCA_900461405.1	NCTC10004	K. pneumoniae	Kp1 (7 loci)		Unknown	Unknown	Unknown			15	1	1	18	1	1	4	116	158648	Klebsiella pneumoniae	44	0_0_398_0_0_0_0_0_0_0	Kp1	SL116	CG116
46768	GCA_900451285.1	NCTC243	K. pneumoniae	Kp1 (7 loci)		Unknown	Unknown	Unknown			43	1	2	1	10	4	13	375	19196	Klebsiella pneumoniae	45	0_0_390_0_0_2_0_0_0_0	Kp1	SL375	CG375	20	iuc 1			26,38	rmp 1; KpVP-1
46769	GCA_900635995.1	NCTC418	K. pneumoniae	Kp1 (7 loci)		Unknown	Unknown	Unknown			43	1	2	1	10	4	13	375			46	0_0_390_0_0_0_0_0_0_0	Kp1	SL375	CG375	20	iuc 1					14	iro 1
46770	GCA_900451245.1	NCTC9499	K. quasipneumoniae subsp. similipneumoniae	Kp4 (7 loci)		Unknown	Unknown	Unknown			18	15	26	16	11	13	106	367	43266	Klebsiella quasipneumoniae	47	2_1_32_1_1_0_0_0_0_0	Kp4	SL367	CG367
46771	GCA_900636315.1	NCTC9644	K. pneumoniae	Kp1 (7 loci)		Unknown	Unknown	Unknown			2	1	1	1	9	4	12	23	43447	Klebsiella pneumoniae	48	0_0_429_0_22_0_0_0_0_0	Kp1	SL23	CG23	1	iuc 1			26,38	rmp 1; KpVP-1	2	iro 1
46772	GCA_900636455.1	NCTC9793	K. pneumoniae	Kp1 (7 loci)		Unknown	Unknown	Unknown			2	5	1	1	9	1	6	252	19285	Klebsiella pneumoniae	49	0_0_94_2_0_0_0_0_0_0	Kp1	SL252	CG10023
46773	GCA_002724035.1	NBRC 3318	K. variicola subsp. variicola	Kp3 (7 loci)		Unknown	Unknown	Unknown			60	24	21	53	54	22	172	767	44502	Klebsiella variicola	50	1_0_20_0_0_0_0_0_0_0	Kp3	SL767	CG767
46774	GCA_900084005.1	2880STDY5682602	K. pneumoniae	Kp1 (7 loci)		Unknown	Unknown	Unknown			2	1	2	35	10	24	4	3574	43278	Klebsiella pneumoniae	52	0_0_327_0_0_0_0_0_0_0	Kp1	SL3574	CG3574									329	ybt 4; plasmid
46775	GCA_900084675.1	k142b	K. pneumoniae	Kp1 (7 loci)		Unknown	Unknown	Unknown			2	9	2	1	13	1	16	37	19228	Klebsiella pneumoniae	53	0_0_109_1_7_0_0_0_0_0	Kp1	SL37	CG37
46776	GCA_900084685.1	k223	K. pneumoniae	Kp1 (7 loci)		Unknown	Unknown	Unknown			2	6	1	3	8	1	15	42	19359	Klebsiella pneumoniae	54	0_0_87_4_0_0_0_0_0_0	Kp1	SL383	CG10114
46777	GCA_900085055.1	k547	K. pneumoniae	Kp1 (7 loci)		Unknown	Unknown	Unknown			2	6	1	3	8	1	15	42	18944	Klebsiella pneumoniae	55	0_0_87_4_0_0_1_0_0_0	Kp1	SL383	CG10114
46778	GCA_900084925.1	k684	K. pneumoniae	Kp1 (7 loci)		Unknown	Unknown	Unknown			2	6	1	3	26	1	77	231	18944	Klebsiella pneumoniae	56	0_0_88_0_0_0_5_0_0_0	Kp1	SL231	CG231
46779	GCA_900451275.1	NCTC11686	K. pneumoniae	Kp1 (7 loci)		Unknown	Unknown	Unknown			2	1	2	35	10	24	19	1026			57	0_0_326_0_0_0_0_0_0_0	Kp1	SL1877	CG1026
46780	GCA_002848605.1	002SK2	K. pneumoniae	Kp1 (7 loci)		Unknown	Unknown	Unknown			3	4	6	1	7	4	38	147	19272	Klebsiella pneumoniae	58	0_0_197_0_17_0_0_0_0_0	Kp1	SL147	CG147
46781	GCA_001914065.1		K. pneumoniae			Unknown	Unknown	Unknown			2	1	2	1	45		9				59	0_0_102_2_0_1_0_0_0_0	Kp1	SL186	CG220
46782	GCA_004004775.1	064B6	K. pneumoniae	Kp1 (7 loci)		Unknown	Unknown	Unknown			3	4	6	1	9	4	38	580	88883	Klebsiella pneumoniae	60	0_0_197_2_0_0_0_0_0_0	Kp1	SL147	CG580
46783	GCA_004005105.1	064C6	K. pneumoniae	Kp1 (7 loci)		Unknown	Unknown	Unknown			4	1	1	1	21	1	35	76	103510	Klebsiella pneumoniae	61	0_0_46_1_4_0_0_0_0_0	Kp1	SL76	CG76
46784	GCA_004179405.1	071G9	K. pneumoniae	Kp1 (7 loci)		Unknown	Unknown	Unknown			4	1	2	52	1	1	7	307	19275	Klebsiella pneumoniae	62	0_0_369_0_0_0_0_0_1_1	Kp1	SL307	CG307
46785	GCA_004010995.1	08EU827	K. pneumoniae	Kp1 (7 loci)		Unknown	Unknown	Unknown			2	6	1	5	4	1	6	101	19266	Klebsiella pneumoniae	63,13527	0_0_84_0_0_1_0_0_0_0	Kp1	SL101	CG101									63	ybt 6; ICEKp5
46786	GCA_003687895.1	1002865	K. pneumoniae	Kp1 (7 loci)		Unknown	Unknown	Unknown			3	4	6	1	7	4	40	392			64	0_0_197_0_25_0_2_0_0_0	Kp1	SL147	CG147
46787	GCA_001061725.1	1010_KPNE	K. pneumoniae	Kp1 (7 loci)		Unknown	Unknown	Unknown			2	1	97	1	9	4	13	846	43558	Klebsiella pneumoniae	69	0_0_69_0_0_0_0_0_0_0	Kp1	SL846	CG846
46788	GCA_001060105.1	1012_KPNE	K. pneumoniae	Kp1 (7 loci)		Unknown	Unknown	Unknown			2	1	97	1	9	4	13	846			70	0_0_69_0_0_0_0_0_0_0	Kp1	SL846	CG846
46789	GCA_003403275.1	1013	K. pneumoniae	Kp1 (7 loci)		Unknown	Unknown	Unknown			2	1	1	1	4	4	4	17	18957	Klebsiella pneumoniae	71	0_0_22_8_0_0_0_0_0_0	Kp1	SL17	CG10122

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belonging to any project
not belonging to any project
Barbier et al_ApplEnvironMicrobiol_2020
Bialek et al 2014_EID
Biedrzycka et al 2021_JAC
BIRDY_Madagascar
Bowers et al 2015_PlosOne
CG258-TP
Dataset1_ST147_SARA_cours
Dataset2_CG147_SARA_cours
Ellington et al. 2019
Ezzat_2021
Garcia-Fierro et al 2022_JAC
Gorrie et al. 2017
Hennart_et_al_2022_full_collection
Hennart et al. 2022_MBE
Huynh et al 2020 Gut Microbes
Isolates Excluded (failed QC)
Isolates Exlcuded (contigs size)
Martin et al 2021_PNAS
Musicha et al. 2019
OkomoEtAl2020
Outbreaks
Plasmids
project_RI_JG_SB
Public isolates
published_genomes
Raffelsberger et al 2021_GutMicrobes
Rodrigues et al 2022_MGen
Rodrigues et al 2022_MSpectrum
Rollin et al 2022_IJID
SPARK project
ST258_ST512_ST1199
Test cg634 nomemclature