| 3 | Public isolates | This project contains the isolates that should be publicly available through the public access database. | 6077 |
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| 5 | Test cg634 nomemclature | | 460 |
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| 6 | Onori et al 2015_JCM | CG258 study Italy 2015 (PMID: 26135860) | 152 |
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| 7 | Holt et al 2015_PNAS | Global population study - this project contains a subset of 287 isolates (PMID: 26100894) | 287 |
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| 8 | Bowers et al 2015_PlosOne | CG258 study - this project contains a subset of 165 isolates | 165 |
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| 11 | published_genomes | All isolates with published genome imported in BIGSdb, and validated for scgMLST_S study | 721 |
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| 12 | Bialek et al 2014_EID | 167 isolates from Bialek et al. in which the scgMLST-634 scheme was defined (PMID: 25341126) | 167 |
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| 22 | Raffelsberger et al 2021_GutMicrobes | Collection of KpSC genomes studied in "Gastrointestinal carriage of Klebsiella pneumoniae in a general adult population: a cross-sectional study of risk factors and bacterial genomic diversity" (PMID: 34182896, T7 Klebsiella project) | 484 |
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| 32 | Rollin et al 2022_IJID | Collection of K. pneumoniae genomes studied in "Spontaneous and postsurgical/traumatic Klebsiella pneumoniae meningitis: two distinct clinico-microbiological entities" (PMID: 34767984) | 7 |
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| 35 | Garcia-Fierro et al 2022_JAC | Collection of KpSC genomes studied in 'Genomic characterization of CTX-M-15/DHA-1/OXA-48-producing Klebsiella pneumoniae of ST15-ST11-ST307 lineages from companion animals in France' (PMID: 35224624) | 471 |
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| 37 | Rodrigues et al 2022_MSpectrum | Collection of KpSC genomes studied in 'High prevalence of Klebsiella pneumoniae in EU food as determined using culture and molecular detection methods' (PMID: 35196810) | 131 |
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| 39 | OkomoEtAl2020 | High resolution Klebsiella sequence typing - Wellcome Trust course genomics teaching | 40 |
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| 45 | SPARK project | Collection of KpSC genomes studied in "One Health or Three? Transmission modelling of Klebsiella isolates reveals ecological barriers to transmission between humans, animals and the environment" (BioRxiv,https://doi.org/10.1101/2021.08.05.455249) | 2096 |
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| 46 | Ezzat_2021 | Klebsiella from South Africa | 13 |
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| 69 | Huynh et al 2020 Gut Microbes | Collection of KpSC genomes studied in "Klebsiella pneumoniae carriage in low-income countries: antimicrobial resistance, genomic diversity and risk factors" (PMID 32404021, ACIP project) | 496 |
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| 77 | Martin et al 2021_PNAS | Collection of genomes from isolates studied in "Anatomy of an extensively drug-resistant Klebsiella pneumoniae outbreak in Tuscany, Italy" (PMID: 34819373) | 129 |
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| 78 | Rodrigues et al 2022_MGen | Collection of K. pneumoniae genomes studied in "Genomic evolution of the globally disseminated multidrugresistant Klebsiella pneumoniae clonal group 147" (PMID: 35019836) | 218 |
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| 82 | Dataset1_ST147_SARA_cours | Dataset containing 25 isolates of ST147 for teaching purposes | 25 |
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| 83 | Dataset2_CG147_SARA_cours | Dataset containing 59 isolates of CG147 for teaching purposes | 59 |
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| 84 | Biedrzycka et al 2021_JAC | Collection of K. pneumoniae genomes studied in "Dissemination of Klebsiella pneumoniae ST147 NDM-1 in Poland, 2015–19" (PMID: 34164678) | 9 |
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| 92 | Hennart et al. 2022_MBE | Reference Genomes for LINcodes (Table S9) (PMID: 35700230) | 45 |
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| 110 | Hennart_et_al_2022_full_collection | Collection of genomes from the paper "A Dual Barcoding Approach to Bacterial Strain Nomenclature: Genomic Taxonomy of Klebsiella pneumoniae Strains" | PMID: 35700230 | 7388 |
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| 127 | Barbier et al_ApplEnvironMicrobiol_2020 | Collection of KpSC genomes studied in "The ZKIR Assay, a Real-Time PCR Method for the Detection of Klebsiella pneumoniae and Closely Related Species in Environmental Samples" (PMID: 32005732) | 31 |
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| 147 | Gorrie et al. 2017 | Gastrointestinal Carriage Is a Major Reservoir of Klebsiella pneumoniae Infection in Intensive Care Patients (PMID: 28369261) | 167 |
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| 148 | Ellington et al. 2019 | Contrasting patterns of longitudinal population dynamics and antimicrobial resistance mechanisms in two priority bacterial pathogens over 7 years in a single center (https://doi.org/10.1186/s13059-019-1785-1) | 160 |
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| 149 | Musicha et al. 2019 | Genomic analysis of Klebsiella pneumoniae isolates from Malawi reveals acquisition of multiple ESBL determinants across diverse lineages (PMID: 30778540) | 70 |
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| 998 | Plasmids | | 10 |
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| 999 | Isolates Excluded (failed QC) | KlebNET-GSP qc | 378 |
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