Kleborate - Klebsiella PasteurMLST
Kleborate is a tool to screen genome assemblies of Klebsiella pneumoniae and the Klebsiella pneumoniae species complex (KpSC) for:
- MLST sequence type
- species (e.g. K. pneumoniae, K. quasipneumoniae, K. variicola, etc.)
- ICEKp associated virulence loci: yersiniabactin (ybt), colibactin (clb), salmochelin (iro), hypermucoidy (rmpA)
- virulence plasmid associated loci: salmochelin (iro), aerobactin (iuc), hypermucoidy (rmpA, rmpA2)
- antimicrobial resistance determinants: acquired genes, SNPs, gene truncations and intrinsic β-lactamases
- K (capsule) and O antigen (LPS) serotype prediction, via wzi alleles and Kaptive
Kleborate and Kaptive are described in Lam et al. 2021 Nat Commun 12:4188 and Lam et al. 2022 Microb Genom 8:000800 respectively.
This tool will run Kleborate against selected genome assembles and produce the results in tabular form.
Version: Kleborate v2.3.2
Please select the required isolate ids to run the analysis for. These isolate records must include genome sequences.