Full information on isolate Kp20-068 (id:58264)
Provenance/primary metadata
- id
- 58264
- isolate
- Kp20-068
- sender
- Gisele Peirano, University of Calgary
- curator
- Martin Rethoret-Pasty, Institut Pasteur, Paris, France (E-mail: martin.rethoret-pasty@pasteur.fr)
- update history
- 4 updates show details
- date entered
- 2024-02-09
- datestamp
- 2024-05-03
- taxonomic designation
- K. pneumoniae
- isolation year
- 2020
- city
- Calgary
- country
- Canada
- continent
- North America
- source type
- Human
- host
- Human
- source details
- blood
Sequence bin
- contigs
- 102
- total length
- 5,414,674 bp
- max length
- 473,487 bp
- mean length
- 53,086 bp
- N50
- 214,574
- L50
- 8
- N90
- 84,427
- L90
- 24
- N95
- 39,970
- L95
- 29
- %GC
- 57.32
- Ns
- 0
- gaps
- 0
- loci tagged
- 630
Assembly checks
| Check | Status | Warn/fail reason |
|---|---|---|
| Number of contigs | ||
| Assembly size | ||
| Minimum N50 | ||
| %GC |
Annotation quality metrics
Scheme completion
| Scheme | Scheme loci | Designated loci | Annotation | |
|---|---|---|---|---|
| Score | Status | |||
| MLST | 7 | 7 | 100 | |
| scgMLST629_S | 629 | 621 | 98 | |
Analysis
Kleborate
- species
- Klebsiella pneumoniae
- species_match
- strong
- virulence_score
- 0
- resistance_score
- 0
- num_resistance_classes
- 0
- num_resistance_genes
- 0
- YbST
- 0
- CbST
- 0
- AbST
- 0
- SmST
- 0
- RmST
- 0
- wzi
- wzi351
- K_locus
- KL113
- K_type
- unknown (KL113)
- K_locus_problems
- *
- K_locus_confidence
- Very high
- K_locus_identity
- 96.68%
- O_locus
- O1/O2v2
- O_type
- O1
- O_locus_problems
- none
- O_locus_confidence
- Very high
- O_locus_identity
- 99.16%
- Bla_chr
- SHV-194*
Analysis performed: 2024-04-30; Kleborate v2.3.2
Schemes and loci
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Tools
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