Full information on isolate ERR6565006 (id:30025)
Provenance/primary metadata
- id
- 30025
- isolate
- ERR6565006
- alias
- SAMEA9552177
- sender
- Sebastien Bridel, Institut Pasteur, Paris, France
- curator
- Martin Rethoret-Pasty, Institut Pasteur, Paris, France (E-mail: martin.rethoret-pasty@pasteur.fr)
- update history
- 7 updates show details
- date entered
- 2023-02-15
- datestamp
- 2024-05-03
- taxonomic designation
- K. pneumoniae
- QC status
- 0000
- isolation year
- 2017
- city
- Unknown
- country
- Switzerland
- continent
- Europe
- source type
- Human
- host
- Human
- source details
- blood culture
Sequence bin
- contigs
- 69
- total length
- 5,320,265 bp
- max length
- 482,574 bp
- mean length
- 77,106 bp
- N50
- 204,689
- L50
- 10
- N90
- 51,126
- L90
- 29
- N95
- 30,278
- L95
- 35
- %GC
- 57.48
- Ns
- 796
- gaps
- 8
- loci tagged
- 689
Assembly checks
| Check | Status | Warn/fail reason |
|---|---|---|
| Number of contigs | ||
| Assembly size | ||
| Minimum N50 | ||
| %GC |
Annotation quality metrics
Scheme completion
| Scheme | Scheme loci | Designated loci | Annotation | |
|---|---|---|---|---|
| Score | Status | |||
| MLST | 7 | 7 | 100 | |
| Ribosomal MLST | 53 | 53 | 100 | |
| scgMLST629_S | 629 | 626 | 99 | |
Analysis
Kleborate
- species
- Klebsiella pneumoniae
- species_match
- strong
- QC_warnings
- ambiguous_bases
- virulence_score
- 0
- resistance_score
- 0
- num_resistance_classes
- 0
- num_resistance_genes
- 0
- YbST
- 0
- CbST
- 0
- AbST
- 0
- SmST
- 0
- RmST
- 0
- wzi
- wzi447
- K_locus
- unknown (KL107)
- K_type
- unknown (KL107)
- K_locus_problems
- ?-+*
- K_locus_confidence
- None
- K_locus_identity
- 87.28%
- K_locus_missing_genes
- KL107_06_wzc,KL107_07_wbaP,KL107_08,KL107_09,KL107_10
- O_locus
- OL101
- O_type
- unknown (OL101)
- O_locus_problems
- ?-
- O_locus_confidence
- Good
- O_locus_identity
- 94.95%
- O_locus_missing_genes
- OL101_06_wzm,OL101_09_glycosylhydrolase
- Bla_chr
- SHV-1
- spurious_resistance_hits
- fosA7*?-0%
Analysis performed: 2024-04-05; Kleborate v2.3.2
Schemes and loci
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Tools
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