Full information on isolate ERR5530323 (id:29174)
Provenance/primary metadata
- id
- 29174
- isolate
- ERR5530323
- alias
- SAMEA8399248
- sender
- Sebastien Bridel, Institut Pasteur, Paris, France
- curator
- Martin Rethoret-Pasty, Institut Pasteur, Paris, France (E-mail: martin.rethoret-pasty@pasteur.fr)
- update history
- 6 updates show details
- date entered
- 2023-02-15
- datestamp
- 2024-05-03
- taxonomic designation
- K. pneumoniae
- QC status
- 0000
- isolation year
- 2018
- city
- Unknown
- country
- Norway
- continent
- Europe
- source type
- Unknown
- host
- Unknown
- source details
- Cecum
Sequence bin
- contigs
- 51
- total length
- 5,591,325 bp
- max length
- 893,166 bp
- mean length
- 109,634 bp
- N50
- 484,210
- L50
- 5
- N90
- 96,912
- L90
- 14
- N95
- 73,642
- L95
- 17
- %GC
- 57.20
- Ns
- 494
- gaps
- 5
- loci tagged
- 689
Assembly checks
| Check | Status | Warn/fail reason |
|---|---|---|
| Number of contigs | ||
| Assembly size | ||
| Minimum N50 | ||
| %GC |
Annotation quality metrics
Scheme completion
| Scheme | Scheme loci | Designated loci | Annotation | |
|---|---|---|---|---|
| Score | Status | |||
| MLST | 7 | 7 | 100 | |
| Ribosomal MLST | 53 | 53 | 100 | |
| scgMLST629_S | 629 | 627 | 99 | |
Analysis
Kleborate
- species
- Klebsiella pneumoniae
- species_match
- strong
- QC_warnings
- ambiguous_bases
- virulence_score
- 0
- resistance_score
- 0
- num_resistance_classes
- 1
- num_resistance_genes
- 1
- YbST
- 0
- CbST
- 0
- AbST
- 0
- SmST
- 0
- RmST
- 0
- wzi
- wzi351
- K_locus
- KL113
- K_type
- unknown (KL113)
- K_locus_problems
- *
- K_locus_confidence
- Very high
- K_locus_identity
- 96.69%
- O_locus
- O1/O2v2
- O_type
- O1
- O_locus_problems
- none
- O_locus_confidence
- Very high
- O_locus_identity
- 99.18%
- Tet_acquired
- tet(D)
- Bla_chr
- SHV-194*
Analysis performed: 2024-03-27; Kleborate v2.3.2
Schemes and loci
Navigate and select schemes within tree to display allele designations
Tools
Export:
Third party:
Analysis: