Full information on isolate DRR101008 (id:29071)
Provenance/primary metadata
- id
- 29071
- isolate
- DRR101008
- alias
- SAMD00092902
- sender
- Sebastien Bridel, Institut Pasteur, Paris, France
- curator
- Martin Rethoret-Pasty, Institut Pasteur, Paris, France (E-mail: martin.rethoret-pasty@pasteur.fr)
- update history
- 7 updates show details
- date entered
- 2023-02-15
- datestamp
- 2024-05-03
- taxonomic designation
- K. pneumoniae
- QC status
- 0000
- isolation year
- 2015
- city
- Unknown
- country
- Taiwan
- continent
- Asia
- source type
- Unknown
- host
- Unknown
- source details
- Unknown
Sequence bin
- contigs
- 220
- total length
- 5,764,698 bp
- max length
- 264,802 bp
- mean length
- 26,204 bp
- N50
- 66,217
- L50
- 26
- N90
- 15,820
- L90
- 94
- N95
- 8,189
- L95
- 120
- %GC
- 56.75
- Ns
- 406
- gaps
- 5
- loci tagged
- 686
Assembly checks
| Check | Status | Warn/fail reason |
|---|---|---|
| Number of contigs | ||
| Assembly size | ||
| Minimum N50 | ||
| %GC |
Annotation quality metrics
Scheme completion
| Scheme | Scheme loci | Designated loci | Annotation | |
|---|---|---|---|---|
| Score | Status | |||
| MLST | 7 | 7 | 100 | |
| Ribosomal MLST | 53 | 53 | 100 | |
| scgMLST629_S | 629 | 621 | 98 | |
Analysis
Kleborate
- species
- Klebsiella pneumoniae
- species_match
- strong
- QC_warnings
- ambiguous_bases
- virulence_score
- 0
- resistance_score
- 2
- num_resistance_classes
- 5
- num_resistance_genes
- 5
- YbST
- 0
- CbST
- 0
- AbST
- 0
- SmST
- 0
- RmST
- 0
- wzi
- wzi27
- K_locus
- unknown (KL27)
- K_type
- unknown (K27)
- K_locus_problems
- ?-
- K_locus_confidence
- None
- K_locus_identity
- 99.88%
- K_locus_missing_genes
- KL27_09_wckS,KL27_10_wckR,KL27_11_wzy,KL27_12_wzx,KL27_13_wckQ,KL27_14_wcuJ,KL27_16_wctF
- O_locus
- O1/O2v1
- O_type
- O1
- O_locus_problems
- ?-
- O_locus_confidence
- Good
- O_locus_identity
- 98.55%
- O_locus_missing_genes
- O1/O2v1_06_wbbO
- AGly_acquired
- aph(3')-Ia
- Sul_acquired
- sul1
- Bla_ESBL_acquired
- OXA-17;SHV-12
- Bla_Carb_acquired
- GES-5^
- SHV_mutations
- 238S;240K;35Q
- Flq_mutations
- GyrA-83Y
Analysis performed: 2024-03-27; Kleborate v2.3.2
Schemes and loci
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