Full information on isolate ERR4795731 (id:26458)
Provenance/primary metadata
- id
- 26458
- isolate
- ERR4795731
- aliases
- G18000478; RB 1247; SAMEA6375444
- sender
- Sebastien Bridel, Institut Pasteur, Paris, France
- curator
- Martin Rethoret-Pasty, Institut Pasteur, Paris, France (E-mail: martin.rethoret-pasty@pasteur.fr)
- update history
- 7 updates show details
- date entered
- 2023-02-15
- datestamp
- 2024-05-03
- taxonomic designation
- K. pneumoniae
- QC status
- 0000
- isolation year
- 2014
- city
- Valle
- country
- Colombia
- continent
- South America
- source type
- Human
- host
- Human
- source details
- Blood
Sequence bin
- contigs
- 52
- total length
- 5,464,766 bp
- max length
- 519,117 bp
- mean length
- 105,092 bp
- N50
- 383,310
- L50
- 6
- N90
- 86,638
- L90
- 20
- N95
- 71,528
- L95
- 23
- %GC
- 57.39
- Ns
- 580
- gaps
- 6
- loci tagged
- 693
Assembly checks
| Check | Status | Warn/fail reason |
|---|---|---|
| Number of contigs | ||
| Assembly size | ||
| Minimum N50 | ||
| %GC |
Annotation quality metrics
Scheme completion
| Scheme | Scheme loci | Designated loci | Annotation | |
|---|---|---|---|---|
| Score | Status | |||
| MLST | 7 | 7 | 100 | |
| Ribosomal MLST | 53 | 53 | 100 | |
| scgMLST629_S | 629 | 629 | 100 | |
Analysis
Kleborate
- species
- Klebsiella pneumoniae
- species_match
- strong
- QC_warnings
- ambiguous_bases
- virulence_score
- 0
- resistance_score
- 2
- num_resistance_classes
- 4
- num_resistance_genes
- 4
- YbST
- 0
- CbST
- 0
- AbST
- 0
- SmST
- 0
- RmST
- 0
- wzi
- wzi105
- K_locus
- KL108
- K_type
- unknown (KL108)
- K_locus_problems
- ?-
- K_locus_confidence
- Good
- K_locus_identity
- 99.99%
- K_locus_missing_genes
- KL108_18_rfbp
- O_locus
- O1/O2v2
- O_type
- O1
- O_locus_problems
- none
- O_locus_confidence
- Very high
- O_locus_identity
- 98.96%
- AGly_acquired
- aadA16*
- Flq_acquired
- qnrB6^
- Tet_acquired
- tet(D)
- Bla_Carb_acquired
- KPC-2
- Bla_chr
- SHV-1^
- truncated_resistance_hits
- dfrA27?-0%
- spurious_resistance_hits
- TEM-150*?-0%;catA1*?-0%;sul1?-75%
Analysis performed: 2024-03-26; Kleborate v2.3.2
Schemes and loci
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