Full information on isolate ERR4635159 (id:25896)
Provenance/primary metadata
- id
- 25896
- isolate
- ERR4635159
- aliases
- 17ars-nmc0224; G18755704; SAMEA5758655
- sender
- Sebastien Bridel, Institut Pasteur, Paris, France
- curator
- Martin Rethoret-Pasty, Institut Pasteur, Paris, France (E-mail: martin.rethoret-pasty@pasteur.fr)
- update history
- 7 updates show details
- date entered
- 2023-02-15
- datestamp
- 2024-05-03
- taxonomic designation
- K. pneumoniae
- QC status
- 0000
- isolation year
- 2017
- city
- Cagayan de Oro City; X/Misamis Oriental
- country
- Philippines
- continent
- Asia
- source type
- Human
- host
- Human
- source details
- Cerebrospinal fluid
Sequence bin
- contigs
- 131
- total length
- 5,458,089 bp
- max length
- 454,819 bp
- mean length
- 41,665 bp
- N50
- 182,268
- L50
- 11
- N90
- 33,313
- L90
- 41
- N95
- 14,867
- L95
- 53
- %GC
- 57.31
- Ns
- 591
- gaps
- 6
- loci tagged
- 690
Assembly checks
| Check | Status | Warn/fail reason |
|---|---|---|
| Number of contigs | ||
| Assembly size | ||
| Minimum N50 | ||
| %GC |
Annotation quality metrics
Scheme completion
| Scheme | Scheme loci | Designated loci | Annotation | |
|---|---|---|---|---|
| Score | Status | |||
| MLST | 7 | 7 | 100 | |
| Ribosomal MLST | 53 | 53 | 100 | |
| scgMLST629_S | 629 | 625 | 99 | |
Analysis
Kleborate
- species
- Klebsiella pneumoniae
- species_match
- strong
- QC_warnings
- ambiguous_bases
- virulence_score
- 0
- resistance_score
- 1
- num_resistance_classes
- 9
- num_resistance_genes
- 15
- YbST
- 0
- CbST
- 0
- AbST
- 0
- SmST
- 0
- RmST
- 0
- wzi
- wzi27
- K_locus
- KL27
- K_type
- K27
- K_locus_problems
- ?
- K_locus_confidence
- Good
- K_locus_identity
- 99.95%
- O_locus
- O1/O2v1
- O_type
- O1
- O_locus_problems
- none
- O_locus_confidence
- Very high
- O_locus_identity
- 98.55%
- AGly_acquired
- aac(3)-IId^;aac(6')-Ib-cr.v2;aadA16*;strA.v1^;strB.v1
- Flq_acquired
- qnrB6^
- MLS_acquired
- mphA
- Phe_acquired
- catII.2*
- Rif_acquired
- arr-3
- Sul_acquired
- sul1;sul1;sul2*
- Tmt_acquired
- dfrA27
- Bla_acquired
- TEM-1D.v1^
- Bla_ESBL_acquired
- CTX-M-15
- Bla_chr
- SHV-1^
Analysis performed: 2024-03-27; Kleborate v2.3.2
Schemes and loci
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