Full information on isolate ATCC 43816 KPPR1 (id:1813)

Projects

This isolate is a member of the following projects:

Public isolates: This project contains the isolates that should be publicly available through the public access database.
published_genomes: All isolates with published genome imported in BIGSdb, and validated for scgMLST_S study

Provenance/primary metadata

id: 1813
isolate: ATCC 43816 KPPR1
sender: Camille Blin, Institut Pasteur
curator: Martin Rethoret-Pasty, Institut Pasteur, Paris, France (E-mail: martin.rethoret-pasty@pasteur.fr)
update history: 26 updates show details
date entered: 2014-08-28
datestamp: 2024-05-03
taxonomic designation: K. pneumoniae
phylogroup from ST: Kp1 (7 loci)
QC status: 0000
isolation year: 2010
country: USA
continent: North America
source type: Unknown
host: Unknown
source details: Spontaneous rifampin Res isolate from ATCC43816
virulence info: laboratory strain. rifampin-resistant mutant commonly used in animal, genetic, and molecular biology studies
accession number: CP009208.1

Publication (1)

Broberg CA, Wu W, Cavalcoli JD, Miller VL, Bachman MA (2014). Complete Genome Sequence of Klebsiella pneumoniae Strain ATCC 43816 KPPR1, a Rifampin-Resistant Mutant Commonly Used in Animal, Genetic, and Molecular Biology Studies. Genome Announc 2:

Sequence bin

contigs: 1
length: 5,374,834 bp
%GC: 57.37
Ns: 0
gaps: 0
loci tagged: 3,986

Show sequence bin

Assembly checks

Check	Status	Warn/fail reason
Number of contigs
Assembly size
Minimum N50
%GC

Annotation quality metrics

Scheme completion

Scheme	Scheme loci	Designated loci	Annotation
Scheme	Scheme loci	Designated loci	Score	Status
MLST	7	7	100
Ribosomal MLST	53	53	100
scgMLST629_S	629	625	99

Analysis

rMLST species identification

Rank	Taxon	Taxonomy	Support	Matches
SPECIES	Klebsiella pneumoniae	Proteobacteria > Gammaproteobacteria > Enterobacterales > Enterobacteriaceae > Klebsiella > Klebsiella pneumoniae	100%

Analysis performed: 2022-11-02

Kleborate

species: Klebsiella pneumoniae
species_match: strong
virulence_score: 1
resistance_score: 0
num_resistance_classes: 0
num_resistance_genes: 0
Yersiniabactin: ybt 2; ICEKp1
YbST: 321
CbST: 0
AbST: 0
Salmochelin: iro 3 (truncated)
SmST: 21
RmpADC: rmp 3; ICEKp1
RmST: 145
wzi: wzi2
K_locus: KL2
K_type: K2
K_locus_problems: none
K_locus_confidence: Very high
K_locus_identity: 99.72%
O_locus: O1/O2v1
O_type: O1
O_locus_problems: none
O_locus_confidence: Very high
O_locus_identity: 99.81%
Bla_chr: SHV-1*
spurious_resistance_hits: fosA7*?-0%
ybtS: 8
ybtX: 55
ybtQ: 50
ybtP: 6
ybtA: 5
irp2: 117
irp1: 125
ybtU: 6
ybtT: 7
ybtE: 7
fyuA: 6
iroB: 6
iroC: 38-4%
iroD: 10
iroN: 5
rmpA: 20
rmpD: 1
rmpC: 1

Analysis performed: 2024-02-12; Kleborate v2.3.2

Similar isolates (determined by classification schemes)

Experimental schemes are subject to change and are not a stable part of the nomenclature.

Classification scheme	Underlying scheme	Clustering method	Mismatch threshold	Status	Group
klebs_species_v1.0	scgMLST629_S	Single-linkage	610	experimental	1 (13436 isolates)
klebs_subspecies_v1.0	scgMLST629_S	Single-linkage	585	experimental	1 (13415 isolates)
klebs_sublineage_v1.0	scgMLST629_S	Single-linkage	190	experimental	206 (6 isolates)
klebs_clonalgroup_v1.0	scgMLST629_S	Single-linkage	43	experimental	303 (4 isolates)
klebs_threshold10_v1.0	scgMLST629_S	Single-linkage	10	experimental	480 (4 isolates)
klebs_threshold7_v1.0	scgMLST629_S	Single-linkage	7	experimental	1507 (3 isolates)
klebs_threshold4_v1.0	scgMLST629_S	Single-linkage	4	experimental	1852 (3 isolates)
klebs_threshold2_v1.0	scgMLST629_S	Single-linkage	2	experimental	2311 (3 isolates)
klebs_threshold1_v1.0	scgMLST629_S	Single-linkage	1	experimental	3140 (2 isolates)
klebs_threshold0_v1.0	scgMLST629_S	Single-linkage	0	experimental	3851 (2 isolates)
klebs_species_v1.0	scgMLST629_S	Single-linkage	610	experimental	1 (13436 isolates)
klebs_subspecies_v1.0	scgMLST629_S	Single-linkage	585	experimental	1 (13415 isolates)
klebs_sublineage_v1.0	scgMLST629_S	Single-linkage	190	experimental	206 (6 isolates)
klebs_clonalgroup_v1.0	scgMLST629_S	Single-linkage	43	experimental	303 (4 isolates)
klebs_threshold10_v1.0	scgMLST629_S	Single-linkage	10	experimental	480 (4 isolates)
klebs_threshold7_v1.0	scgMLST629_S	Single-linkage	7	experimental	1507 (3 isolates)
klebs_threshold4_v1.0	scgMLST629_S	Single-linkage	4	experimental	1852 (3 isolates)
klebs_threshold2_v1.0	scgMLST629_S	Single-linkage	2	experimental	2311 (3 isolates)
klebs_threshold1_v1.0	scgMLST629_S	Single-linkage	1	experimental	3140 (2 isolates)
klebs_threshold0_v1.0	scgMLST629_S	Single-linkage	0	experimental	3851 (2 isolates)

Schemes and loci

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Tools

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