LINtree - Klebsiella PasteurMLST

This plugin is a wrapper for LINtree, a tool to infer prefix trees with branch lengths from sets of Life Identification Number (LIN) ® (trademark registered by This Genomic Life, Inc, Floyd, VA, USA) codes. Such LIN-based prefix trees are very useful to reflect the phylogenetic relationships among genomes typed by cgMLST where LIN codes have been assigned. Only isolates with an assigned LIN code can be included in the tree.

Once the tree has been generated it is uploaded to the Interactive Tree of Life online service:

LINtree has been developed by Alexis Criscuolo (1). The code can be found at https://gitlab.pasteur.fr/GIPhy/LINtree.

1. Genome Informatics & Phylogenetics (GIPhy), Centre de Ressources Biologiques de l'Institut Pasteur (CRBIP), Institut Pasteur, Paris, France

iTOL is developed by: Ivica Letunic (1) and Peer Bork (2,3,4).

1. Biobyte solutions GmbH, Bothestr 142, 69126 Heidelberg, Germany
2. European Molecular Biology Laboratory, Meyerhofstrasse 1, 69117 Heidelberg, Germany
3. Max Delbrück Centre for Molecular Medicine, 13125 Berlin, Germany
4. Department of Bioinformatics, Biocenter, University of Würzburg, 97074 Würzburg, Germany

Web site: https://itol.embl.de/
Publication: Letunic & Bork (2021) Interactive tree of life (iTOL) v5: an online tool for phylogenetic tree display and annotation. Nucleic Acids Res 49(W1):W293-6.