Sequence bin for SB5502

Contig summary statistics

Contigs
53
Total length
5,175,960
Minimum length
296
Maximum length
522,288
Mean length
97,660
N50
230,593
L50
8
N90
62,561
L90
22
N95
32,290
L95
27

FASTAEMBLGBKGFF3

SequenceSequencing methodOriginal designationLengthCommentsLocusStartEndDirectionAnnotation
336130contig_0001522288blaSHV (SHV beta-lactamase) 6039361250 EMBL GBK
marA 8135481731
marR 8174982183
KP1_2672_S 9445295396
KP1_2673_S 9554196023
yneJ_S 9597796855
yneI_S 9745298345
yneH_S 9842699352
KP1_2697_S 113638114309
KP1_2700_S 115912116940
KP1_2702_S 117508117819
KP1_2703_S 117996118751
gst_S 446635447240
pdxY_S 447283448143
tyrS_S 448205449479
pdxH_S 449604450260
KP1_3049_S 450318450641
anmK_S 450734451831
ydhM_S 459902460501
nemA_S 460555461652
gloA_S 461731462138
KP1_3065_S 462971463318
ydhO_S 463659464531
336104contig_0004377088KPNJ2_RS23430 1431814737 EMBL GBK
yjjA_S 8343483925
dnaC_S 8399184728
dnaT_S 8473185270
yjjB_S 8537385861
yjjP_S 8583786613
KP1_0775_S 8689388077
KP1_0776_S 8809488975
fhuF_S 9279393581
ycdT_S 9368894734
mtr_S 9488595238
holD_S 9687697289
rimI_S 9725897704
yjjG_S 9771998396
prfC_S 98487100076
deoA_S 105943107265
deoB_S 107318108541
KP1_0801_S 108644109363
lplA_S 109443110459
smp_S 110459111106
serB_S 111190112182
sms_S 112192113574
nadR_S 113596114828
yjjK_S 114922116589
rob 120433121302
creB_S 121998122687
creC_S 122687124111
arcA_S 125593126309
lasT_S 126942127628
thrA_S 127948130452
thrB_S 130454131383
rpsT (30S ribosomal protein S20) 146822147085
yabF_S 174927175460
kefC_S 175453177318
folA_S 177492177971
apaH_S 178395179243
apaG_S 179248179625
ksgA_S 179628180449
pdxA_S 180446181435
araD_S 197329198024
araA_S 198162199664
araB_S 199675201384
araC_S 201722202567
yabI_S 202696203463
tbpA_S 205721206665
yabN_S 206994208649
KP1_0882_S 208731208889
setA_S 209157210341
gudP_S 210375211685
ilvI_S 225006226730
ilvH_S 226703227224
fruR_S 227405228409
KP1_0903_S 229014229508
mraW_S 229511230452
ftsL_S 230449230814
ftsI_S 230830232596
mutT_S 250567250959
yacG_S 251012251206
KP1_0925_S 251216251959
coaE_S 251959252579
KP1_0927_S 252735252866
guaC_S 252923253966
ppdD_S 256593257024
nadC_S 257206258099
ampD_S 258233258796
ampE_S 258793259647
KP1_0935_S 259883260833
KP1_0936_S 260833262239
lpdA_S 270134271561
KP1_0945_S 271726272010
KP1_0946_S 272056272871
hpt_S 287563288111
yadG_S 289018289944
yadH_S 289941290711
yadI_S 290834291274
KP1_0965_S 291339292586
folK_S 294873295352
yadB_S 296806297687
dksA_S 297747298220
sfsA_S 298365299081
map_S 342265343059
rpsB (30S ribosomal protein S2) 343382344107
tsf_S 344227345078
pyrH_S 345228345953
frr_S 346104346661
ispC_S 346890348092
336141contig_0003329064cbiQ_S 154628155305 EMBL GBK
KP1_4452_S 155292155573
KP1_4453_S 155575156312
KP1_4455_S 157019157813
KP1_4456_S 157824158609
KP1_4457_S 158606159331
pduW_S 184002185216
pduX_S 185272186174
cobD_S 186178187254
amiC_S 187272188561
argA_S 188753190084
ppdA_S 203728204195
thyA_S 204465205259
lgt_S 205266206141
ptsP_S 206387208633
ygdP_S 208646209176
galR_S 217004218020
KP1_4520_S 217981218460
KP1_4521_S 218457219230
KP1_4523_S 219298220725
KP1_4524_S 220733222133
mrkI 249733250317
mrkJ 250461251177
mrkF 251212251847
mrkD 251861252856
mrkC 252847255333
mrkB 255345256046
mrkA 256142256750
dsbC_S 296035296748
xerD_S 296771297667
fldB_S 297768298289
KP1_4612_S 298296298706
KP1_4613_S 298687298953
yqfA_S 300333300992
KP1_4617_S 301156301467
KP1_4618_S 301517302245
KP1_4629_S 313384314586
pepP_S 315772317088
KP1_4632_S 317112317696
KP1_4633_S 317857318186
yggE_S 322466323233
yggA_S 323323323958
yggB_S 324110324967
fbaA_S 325158326237
pgk_S 326335327498
epd_S 327538328566
336134contig_0005314264envR 60696722 EMBL GBK
fis 68077103
KP1_4987_S 82518481
prmA_S 84519332
KP1_4984_S 1078511027
accC_S 1113812487
accB_S 1249812965
KP1_4980_S 1298813440
KP1_4979_S 1366414272
KP1_4978_S 1427215288
KP1_4977_S 1550115692
mdh 3475335229
rplM (50S ribosomal protein L13) 4029340721
rpsI (30S ribosomal protein S9) 4073741129
ptsO_S 5891259184
KP1_4927_S 5918160035
ptsN_S 6008160569
yhbH_S 6064060927
rpoN_S 6095062383
yhbG_S 6243163156
yhbN_S 6316363708
KP1_4921_S 6367764252
yrbI_S 6424964815
rplU (50S ribosomal protein L21) 7358473895
rpmA (50S ribosomal protein L27) 7391674173
infB 9232092637
rpsO (30S ribosomal protein S15) 9527895547
yhbW_S 102461103468
yhbV_S 103612104505
yhbU_S 104496105491
KP1_4871_S 105713106237
KP1_4870_S 106231106734
KP1_4868_S 107061107504
yhbO_S 107466108131
KP1_4865_S 108854109894
yraP_S 110016110591
yraO_S 110601111227
KP1_4861_S 111217111603
KP1_4826_S 140030140326
KP1_4825_S 140323140721
KP1_4824_S 140724141029
KP1_4823_S 141075141443
KP1_4822_S 141593141976
KP1_4816_S 148717149271
ygjU_S 149287150534
ygjT_S 150801151772
ygjR_S 152044153033
KP1_4812_S 153107153607
rpsU (30S ribosomal protein S21) 199452199667
ureB_S 206208206528
ureA_S 206538206840
ureD_S 206850207674
KP1_4750_S 208072208689
folB_S 208794209180
uppP_S 209379210200
ribB_S 219100219753
ygiE_S 219815220585
ygiD_S 220772221563
ygiC_S 221608222768
KP1_4731_S 222774223445
parE 227791229683
parC 234462236717
KpI50233a 241510242037
yqgF_S 285608286024
KP1_4657_S 286024286587
gshB_S 286762287712
KP1_4654_S 287733288539
endA_S 288556289320
KP1_4652_S 289358289858
336108contig_0006310288rpmB (50S ribosomal protein L28) 1481915055 EMBL GBK
rpmG (50S ribosomal protein L33) 1507615243
KP1_5309_S 3396434911
KP1_5307_S 3491536186
yibO_S 3619637821
yibN_S 3798638417
grxC_S 3852238773
secB_S 3883439301
KP1_5262_S 8986390573
tkrA_S 9068291653
KP1_5260_S 9167892958
KP1_5259_S 9306393998
KP1_5258_S 9400294751
KP1_5213_S 149009150040
KP1_5210_S 151959152528
prlC_S 160318162360
yhiP_S 163248164720
uspA_S 164977165414
yhiO_S 165797166132
pitA_S 166188167684
asd_S 225609226763
glgB_S 227002229188
glgX_S 229281231161
glgC_S 231242232537
glgA_S 232537233970
aroK_S 275087275608
aroB_S 275664276758
dam_S 278199279026
rpe_S 279044279721
gph_S 279714280475
trpS_S 280468281472
cysG_S 281545282918
nirD_S 283072283398
yhfC_S 287496288683
ppiA_S 288960289529
KP1_5076_S 289636289803
KP1_5075_S 289793290395
pabA_S 290428290991
crp_S 294422295054
KP1_5070_S 295361295765
prkB_S 295820296689
KP1_5068_S 296726296944
yheT_S 296941297963
yheS_S 298167300071
rpsL (30S ribosomal protein S12) 306885307259
rpsG (30S ribosomal protein S7) 307356307826
336126contig_0007309450yjgB_S 25043523 EMBL GBK
KP1_0569_S 36544538
KP1_0568_S 45285415
KP1_0567_S 54266250
KP1_0517_S 5601156751
KP1_0516_S 5673657839
KP1_0515_S 5674857866
KP1_0514_S 5785058983
KP1_0513_S 5908959733
rplI (50S ribosomal protein L9) 9947699925
rpsR (30S ribosomal protein S18) 99967100194
priB_S 100199100366
rpsF (30S ribosomal protein S6) 100519100914
KP1_0467_S 101255101530
KP1_0446_S 118293118490
KP1_0445_S 118662119003
hflC_S 119086120090
hflK_S 120093121355
hflX_S 121421122701
hfq_S 122777123085
frdD_S 144242144631
blc_S 144745145278
sugE_S 145275145592
ecnB_S 145736145882
ecnA_S 146042146173
efp_S 146247146813
hmsS_S 180827181276
KP1_0379_S 181322182155
KP1_0378_S 182318183016
cbpA_S 183162184079
KP1_0375_S 184064184384
soxR 234044234502
soxS 234587234916
ssb_S 254974255498
uvrA_S 255750258575
KP1_0300_S 258576258932
KP1_0299_S 258936259352
pgi 288269288700
iclR_S 301560302486
aceK_S 302537304321
aceA_S 304424305743
aceB (KP1_0253) 305808307409
metA_S 307670308599
yjaB_S 308756309217
336116contig_0008262653ramR 4738547966 EMBL GBK
ramA 4929249633
betA_S 8308984798
betB_S 8476786239
betT_S 8696989002
ykfE_S 8904889575
KP1_1607_S 166819167616
dcuC_S 167709169082
pagP_S 169421169939
cspE_S 170050170343
KP1_1612_S 170411170794
ybeM_S 170884171672
tatE_S 171915172121
lipA_S 172312173277
ybeF_S 173458174462
KP1_1623_S 181212181679
KP1_1624_S 181683182000
nadD_S 182925183578
holA_S 183568184590
rlpB_S 184599185189
nagD_S 205943206695
nagC_S 206812208032
nagA_S 208041209189
nagB_S 209299210099
nagE_S 210414212369
glnS_S 212548214215
metH_S 214269214577
KP1_1656_S 215554216054
KP1_1657_S 216102216434
fur_S 217050217502
fldA_S 217794218393
KP1_1661_S 218476218838
ybfF_S 218903219676
KP1_1663_S 219716220408
cydA_S 253183254754
cydB_S 254770255909
KP1_1696_S 256041256331
KP1_1697_S 256481256885
tolQ_S 256882257574
tolR_S 257578258006
336148contig_0009230593phoE 1586016279 EMBL GBK
KP1_1206_S 8282283724
KP1_1207_S 8399184632
KP1_1209_S 8481985364
KP1_1211_S 8731688182
KP1_1227_S 9894499309
KP1_1228_S 99333100028
tsx_S 100083100967
yajI_S 101266101805
nrdR_S 101953102402
thiJ_S 112373112972
apbA_S 112929113840
KP1_1246_S 113939114523
yajR_S 114567115931
KP1_1248_S 116091117269
KP1_1251_S 118976119794
tig_S 134248135546
clpP_S 135856136479
clpX_S 136730138004
lon_S 138080140542
hupB_S 140752141024
ppiD_S 141239143113
KP1_1275_S 143262143630
ptsG_S 172141172455
lacI_S 174134175204
rpmE2_S 175320175583
rpmE (50S ribosomal protein L31) 175320175583
rpmJ (50S ribosomal protein L36) 175583175723
acrB 180378183524
acrA 183547184740
acrR 184883185533
adk_S 197079197723
hemH_S 197852198814
gsk_S 198878200182
ybaL_S 200218201894
fsr_S 202120203340
336107contig_0010227956ybhA_S 1654417362 EMBL GBK
ybhE_S 1759018585
KP1_1726_S 1869618962
KP1_1727_S 1901419319
KP1_1728_S 1944719692
KP1_1729_S 2002221233
KP1_1730_S 2138922123
KP1_1731_S 2216522719
KP1_1732_S 2280123166
KP1_1734_S 2427225195
glnH_S 8762288368
dps_S 8877789280
ybiF_S 8951890405
ompX_S 9075791269
ybiP_S 9136092949
KP1_1803_S 9320993334
mntR_S 9352093993
ybiR_S 9399095102
potH_S 177804178757
potI_S 178712179599
KP1_1853_S 179657180145
KP1_1855_S 181393182109
hcr_S 197179198147
hcp_S 198158199810
ybjE_S 199954200853
336127contig_0011222706yedI_S 5987760788 EMBL GBK
KP1_3554_S 6288363107
KP1_3553_S 6323963430
rcsA_S 6346364086
KP1_3551_S 6446264893
sdiA 7029270978
dapA4_S 7549176372
KP1_3538_S 7647177139
tyrP_S 7716478375
KP1_3536_S 7856778806
ftnA_S 7884279339
ruvA_S 105958106569
ruvB_S 106578107588
znuB_S 107652108437
znuC_S 108437109189
znuA_S 109142110212
KP1_3501_S 110228111547
msbB_S 111665112639
purT_S 119719120897
yebG_S 121042121389
KP1_3490_S 121529122188
ptrB_S 122309124369
exoX_S 124373125032
holE_S 125111125341
KP1_3486_S 125445125828
KP1_3451_S 159266159610
yeaZ_S 161798162493
yeaY_S 162532163113
fadD_S 163319165004
minE_S 166278166547
minD_S 166551167363
minC_S 167387168085
KP1_3442_S 168173168493
ycgM_S 168510169169
KP1_3440_S 169264169710
336149contig_0012211004prfA_S 2661427696 EMBL GBK
hemK_S 2769628544
ychQ_S 2854428936
kdsA_S 2979230646
chaA_S 3073331833
chaB_S 3209732327
chaC_S 3246433144
tonB 8259583008
KP1_3291_S 8421084494
pfkB_S 8458985521
KP1_3289_S 8587886636
rpmI (50S ribosomal protein L35) 9014090337
rplT (50S ribosomal protein L20) 9038890744
336117contig_0013207700yeaE_S 6294763831 EMBL GBK
KP1_2220_S 6388864772
gapA 6515065599
yeaA_S 6618166594
KP1_2224_S 6663866916
KP1_2225_S 6701167355
spy_S 9638596867
nadE_S 9792098747
osmE_S 9903099368
celA_S 9964799967
celC_S 101527101874
336102contig_0014203726ycfW_S 1016511409 EMBL GBK
ycfV_S 1140912110
ycfU_S 1210313311
mfd_S 1360717053
ycfS_S 1721718176
KP1_2104 (KP1_2104) 1830818525
KP1_2104 (KP1_2104) 1830818562
ycfQ_S 1881219447
KP1_2092_S 2768128037
ptsG2_S 2829929732
ycfH_S 3002930823
holB_S 3083431838
tmk_S 3183532476
yceG_S 3246633488
pabC_S 3349034299
fabF_S 3442535666
fabG_S 3620336937
fabD_S 3695037879
fabH_S 3789538848
plsX_S 3890239999
rpmF (50S ribosomal protein L32) 4020340376
KP1_2077_S 4039340914
yceF_S 4105641640
mdoC_S 6700468164
KP1_2048_S 6819968792
KP1_2047_S 6885969404
ycdZ_S 6953670018
ycdY_S 7012270676
KP1_2044_S 7069971436
pyrD_S 147809148846
ssuE_S 149069149644
ssuA_S 149637150599
ssuD_S 150596151741
ssuC_S 151752152543
KP1_1916_S 181899183128
msbA_S 184160185908
ihfB_S 188415188702
rpsA (30S ribosomal protein S1) 188854190527
336144contig_0015182890KP1_2532_S 154157154492 EMBL GBK
ydgB_S 154489155211
ydgI_S 155248156630
KP1_2535_S 156808157758
KP1_2536_S 157755157937
336113contig_0016174364ung_S 88529541 EMBL GBK
yfiD_S 985410237
srmB_S 1028311614
yfiC_S 1172512483
nadB_S 1246814087
yfhK_S 3272534164
yfhG_S 3417334880
yfhA_S 3486736204
KP1_4132_S 3627036608
hmpA_S 3668337873
glyA_S 3819939452
suhB_S 5213752940
yfhQ_S 5306153795
iscR_S 5403054521
iscS_S 5470055914
KP1_4113_S 5594156327
iscA_S 5634556668
hscB_S 5674357258
hemF_S 150675151574
amiA_S 151574152446
KP1_4027_S 152496152636
ypeA_S 152643153083
KP1_4024_S 153070153519
KP1_4023_S 153581154156
KP1_4022_S 154251155150
336100contig_0017172015aroC_S 3858839676 EMBL GBK
mepA_S 3967940503
yfcA_S 4050341312
yfcM_S 4131241860
KP1_3965_S 4189242173
flk_S 4707448051
KP1_3960_S 4805048178
pdxB_S 4816249298
KP1_3958_S 4936250375
truA_S 5037551187
dedA_S 5121451873
accD_S 5199652979
folX_S 6399664358
yfcG_S 6442465053
yfcF_S 6523465872
yfcD_S 6654467095
nuoA_S 7908779533
nuoB_S 7954980223
nuoC_S 8031082118
nuoE_S 8212182621
nuoF_S 8261883955
gyrA 123001125631
yejM_S 145406147166
KP1_3855_S 147185147412
yejK_S 147599148606
KP1_3853_S 148626149387
KP1_3852_S 149431150066
rsuA_S 154748155467
bcr_S 155464156660
KP1_3844_S 156992157336
yejE_S 158931159956
336103contig_0018103159KP1_0122_S 3281179 EMBL GBK
btuB_S 11242962
KP1_0120_S 30053127
trmA_S 33294429
KP1_0118_S 44814840
yijC_S 48565488
rpmE (50S ribosomal protein L31) 3011630328
cpxP_S 4083341336
cpxR_S 4148642184
cpxA_S 4218143554
KP1_0077_S 4362644300
sodA_S 4437344999
rhaT_S 4528346317
rhaR_S 4635047195
rhaS_S 4726948105
rhaB_S 4841649882
rhaA_S 4987351138
rhaD_S 5128852118
bipA_S 8545987282
glnA_S 8766189070
glnL_S 8925990308
glnG_S 9031791726
hemN_S 9198393356
KP1_0026_S 9354594051
engB_S 9463595267
polA_S 9561598407
336110contig_001986794fadA_S 66907853 EMBL GBK
fre_S 79608661
ubiD_S 871110186
rfaH_S 1036510853
tatD_S 1085011641
tatC_S 1168612465
tatB_S 1246813004
tatA_S 1300813307
ubiB_S 1338915029
KP1_0193_S 1502615631
ubiE_S 1564516400
yigN_S 1647117919
udp_S 1805518816
metR_S 2247223425
yigM_S 2331324212
KP1_0183_S 2430125101
pldB_S 2514626138
rhtB_S 2624826868
yigB_S 3655537271
xerC_S 3727138173
KP1_0169_S 3817038877
dapF_S 3887439701
KP1_0167_S 3973439937
cyaY_S 4008440404
ilvY_S 7566176635
ilvA_S 7663278119
ilvD_S 7817980029
ilvE_S 8009081019
ilvM_S 8103681293
336135contig_002073377yicE_S 4840649806 EMBL GBK
gltS_S 5045451284
glpK_S 5139952910
glpF_S 5293253783
KP1_5367_S 5422654471
sbp_S 5462355612
336121contig_002168129yieP_S 211912 EMBL GBK
rbsK_S 33154244
rbsB_S 43485238
rbsC_S 52666231
gidB_S 1792118544
atpI_S 1908919541
atpB_S 1954920364
atpE_S 2041420653
atpF_S 2071021174
rpmH (50S ribosomal protein L34) 4951149651
gyrB 5403056441
336111contig_000262661rarA 28933258 EMBL GBK
oqxA 35894764
oqxB 47887940
oqxR 80108489
ygaH_S 5177252107
emrR_S 5222852728
emrA_S 5285454026
KP1_4281_S 5571757393
336101contig_002262561wzi (Wzi outer membrane protein of cps cluster) 5437254818 EMBL GBK
wzc (CD1-VR2-CD2 region of wzc) 5894159067
336137contig_002359852mglA_S 3889940419 EMBL GBK
mglB_S 4053841536
galS_S 4183342855
folE_S 4418444852
336099contig_002449853crl_S 1947019868 EMBL GBK
frsA_S 1992621170
gpt_S 2127621734
pepD_S 2199223449
yafP_S 2349223944
yafE_S 4480745577
KP1_1068_S 4566946475
yafC_S 4786448769
dkgB_S 4881549618
336128 contig_0025 47864
336139contig_002634549zraP_S 64216858 EMBL GBK
KP1_0242_S 68627563
KP1_0241_S 75707842
KP1_0239_S 80298619
nfi_S 86629333
hemE_S 934610410
nudC_S 1045111224
rsd_S 1131811815
rpoB 2804628546
rplL (50S ribosomal protein L7/L12) 3052730892
rplJ (50S ribosomal protein L10) 3095931456
rplA (50S ribosomal protein L1) 3187032574
rplK (50S ribosomal protein L11) 3257833006
336123 contig_0027 32290
336124contig_002830860rplS (50S ribosomal protein L19) 1540915756 EMBL GBK
rpsP (30S ribosomal protein S16) 1716217410
grpE_S 2141522005
ppnK_S 2213023008
smpA_S 2490425245
KP1_4196_S 2531125601
KP1_4197_S 2559126067
smpB_S 2617826660
336146 contig_0029 30436
336118contig_003026346rpsJ (30S ribosomal protein S10) 18982209 EMBL GBK
rplC (50S ribosomal protein L3) 22422871
rplD (50S ribosomal protein L4) 28823487
rplW (50S ribosomal protein L23) 34843786
rplB (50S ribosomal protein L2) 38044625
rpsS (30S ribosomal protein S19) 46424920
rplV (50S ribosomal protein L22) 49355267
rpsC (30S ribosomal protein S3) 52855983
rplP (50S ribosomal protein L16) 59966406
rpmC (50S ribosomal protein L29) 64066597
rpsQ (30S ribosomal protein S17) 65976851
rplN (50S ribosomal protein L14) 70177388
rplX (50S ribosomal protein L24) 73997713
rplE (50S ribosomal protein L5) 77288267
rpsN (30S ribosomal protein S14) 82828587
rpsH (30S ribosomal protein S8) 86219013
rplF (50S ribosomal protein L6) 90269559
rplR (50S ribosomal protein L18) 95699922
rpsE (30S ribosomal protein S5) 993710440
rpmD (50S ribosomal protein L30) 1044410623
rplO (50S ribosomal protein L15) 1062711061
secY_S 1106912400
rpmJ (50S ribosomal protein L36) 1243412550
rpsM (30S ribosomal protein S13) 1269713053
rpsK (30S ribosomal protein S11) 1307013459
rpsD (30S ribosomal protein S4) 1349314113
KP1_5015_S 1413915128
rplQ (50S ribosomal protein L17) 1516915555
KP1_5012_S 1566416032
def_S 2098621495
smf_S 2162422748
KP1_5003_S 2272023193
yrdD_S 2322023762
yrdC_S 2372224339
aroE_S 2434325161
KP1_4999_S 2515825415
yrdA_S 2539125945
336145 contig_0031 25311
336122 contig_0032 22963
336147 contig_0033 22719
336131contig_003420120silA 795011096 EMBL GBK
336138 contig_0035 12196
336112 contig_0036 9926
336098 contig_0037 8183
336125 contig_0040 4451
336142 contig_0041 4195
336143 contig_0042 3599
336150 contig_0038 3042
336119 contig_0043 2074
336109 contig_0044 1916
336120 contig_0039 1708
336129 contig_0045 1400
336106 contig_0046 1221
336133 contig_0047 1058
336140 contig_0048 1037
336114 contig_0049 650
336132 contig_0050 446
336136 contig_0051 366
336115 contig_0052 303
336105 contig_0053 296