Sequence bin for SRR12267800

Contig summary statistics

Contigs
38
Total length
5,098,680
Minimum length
577
Maximum length
641,727
Mean length
134,176
N50
304,268
L50
7
N90
86,538
L90
19
N95
49,953
L95
23

FASTAEMBLGBKGFF3

SequenceSequencing methodOriginal designationLengthCommentsLocusStartEndDirectionAnnotation
3455685NODE_1_length_641727_cov_8.223039641727gst_S 167456168061 EMBL GBK
pdxY_S 168104168964
tyrS_S 169026170300
pdxH_S 170425171081
KP1_3049_S 171139171462
anmK_S 171555172652
ydhM_S 180722181321
nemA_S 181375182472
gloA_S 182551182958
KP1_3065_S 183791184138
ydhO_S 184479185351
rplT (50S ribosomal protein L20) 369346369702
rpmI (50S ribosomal protein L35) 369753369950
KP1_3289_S 373454374212
pfkB_S 374569375501
KP1_3291_S 375596375880
tonB 377082377495
chaC_S 426841427521
chaB_S 427658427888
chaA_S 428152429252
kdsA_S 429339430193
ychQ_S 431049431441
hemK_S 431441432289
prfA_S 432289433371
KP1_3440_S 510602511048
ycgM_S 511143511802
KP1_3442_S 511819512139
minC_S 512227512925
minD_S 512949513761
minE_S 513765514034
fadD_S 515309516994
yeaY_S 517200517781
yeaZ_S 517820518515
KP1_3451_S 520703521047
KP1_3486_S 554468554851
holE_S 554955555185
exoX_S 555264555923
ptrB_S 555927557987
KP1_3490_S 558108558767
yebG_S 558907559254
purT_S 559399560577
msbB_S 567657568631
KP1_3501_S 568749570068
znuA_S 570084571154
znuC_S 571107571859
znuB_S 571859572644
ruvB_S 572708573718
ruvA_S 573727574338
ftnA_S 600954601451
KP1_3536_S 601487601726
tyrP_S 601918603129
KP1_3538_S 603154603822
dapA4_S 603921604802
KP1_3551_S 615400615831
rcsA_S 616207616830
KP1_3553_S 616863617054
KP1_3554_S 617185617409
yedI_S 619504620415
3455688NODE_2_length_455056_cov_9.291933455056betA_S 8091782626 EMBL GBK
betB_S 8259584067
betT_S 8479786830
ykfE_S 8687687403
KP1_1607_S 164992165789
dcuC_S 165882167255
pagP_S 167594168112
cspE_S 168223168516
KP1_1612_S 168584168967
ybeM_S 169057169845
tatE_S 170088170294
lipA_S 170485171450
ybeF_S 171631172635
KP1_1623_S 179385179852
KP1_1624_S 179856180173
nadD_S 181098181751
holA_S 181741182763
rlpB_S 182772183362
nagD_S 204266205018
nagC_S 205135206355
nagA_S 206364207512
nagB_S 207626208426
nagE_S 208741210696
glnS_S 210875212542
metH_S 212596212904
KP1_1656_S 213881214381
KP1_1657_S 214429214761
fur_S 215377215829
fldA_S 216121216720
KP1_1661_S 216803217165
ybfF_S 217230218003
KP1_1663_S 218043218735
cydA_S 251510253081
cydB_S 253097254236
KP1_1696_S 254368254658
KP1_1697_S 254808255212
tolQ_S 255209255901
tolR_S 255905256333
ybhA_S 277253278071
ybhE_S 278300279295
KP1_1726_S 279406279672
KP1_1727_S 279724280029
KP1_1728_S 280157280402
KP1_1729_S 280731281942
KP1_1730_S 282098282832
KP1_1731_S 282874283428
KP1_1732_S 283510283875
KP1_1734_S 284981285904
glnH_S 348592349338
dps_S 349747350250
ybiF_S 350488351375
ompX_S 351727352239
ybiP_S 352330353919
KP1_1803_S 354179354304
mntR_S 354490354963
ybiR_S 354960356072
potH_S 405208406161
potI_S 406116407003
KP1_1853_S 407061407549
KP1_1855_S 408797409513
hcr_S 424534425502
hcp_S 425513427165
ybjE_S 427309428208
3455716NODE_3_length_359042_cov_11.213028359042ispC_S 2902330225 EMBL GBK
frr_S 3045431011
pyrH_S 3116231887
tsf_S 3203832889
rpsB (30S ribosomal protein S2) 3300933734
map_S 3405734851
sfsA_S 7803578751
dksA_S 7889679369
yadB_S 7942980310
folK_S 8176482243
KP1_0965_S 8453085777
yadI_S 8584286282
yadH_S 8640587175
yadG_S 8717288098
hpt_S 8900589553
KP1_0946_S 103918104733
KP1_0945_S 104779105063
lpdA_S 105228106655
KP1_0936_S 114550115956
KP1_0935_S 115956116906
ampE_S 117142117996
ampD_S 117993118556
nadC_S 118690119583
ppdD_S 119765120196
guaC_S 122824123867
KP1_0927_S 123924124055
coaE_S 124211124831
KP1_0925_S 124831125574
yacG_S 125584125778
mutT_S 125831126223
ftsI_S 144194145960
ftsL_S 145976146341
mraW_S 146338147279
KP1_0903_S 147282147776
fruR_S 148381149385
ilvH_S 149566150087
ilvI_S 150060151784
gudP_S 165104166414
setA_S 166448167632
KP1_0882_S 167900168058
yabN_S 168140169795
tbpA_S 170124171068
yabI_S 173326174093
araC_S 174222175067
araB_S 175405177114
araA_S 177125178627
araD_S 178765179460
pdxA_S 195354196343
ksgA_S 196340197161
apaG_S 197164197541
apaH_S 197546198394
folA_S 198646199125
kefC_S 199299201164
yabF_S 201157201690
rpsT (30S ribosomal protein S20) 229532229795
thrB_S 245234246163
thrA_S 246165248669
lasT_S 248989249675
arcA_S 250308251024
creC_S 252506253930
creB_S 253930254619
yjjK_S 260028261695
nadR_S 261789263021
sms_S 263043264425
serB_S 264435265427
smp_S 265511266158
lplA_S 266158267174
KP1_0801_S 267255267974
deoB_S 268077269300
deoA_S 269353270675
prfC_S 276542278131
yjjG_S 278222278899
rimI_S 278914279360
holD_S 279329279742
mtr_S 281153281506
ycdT_S 281657282703
fhuF_S 282810283598
KP1_0776_S 287416288297
KP1_0775_S 288314289498
yjjP_S 289778290554
yjjB_S 290530291018
dnaT_S 291121291660
dnaC_S 291663292400
yjjA_S 292466292957
3455687NODE_4_length_329645_cov_10.351044329645fsr_S 6627667496 EMBL GBK
ybaL_S 6772269398
gsk_S 6943470738
hemH_S 7080271764
adk_S 7189372537
rpmJ (50S ribosomal protein L36) 9389394033
rpmE2_S 9403394296
rpmE (50S ribosomal protein L31) 9403394296
lacI_S 9441295482
ptsG_S 9716197475
KP1_1275_S 125950126318
ppiD_S 126467128341
hupB_S 128556128828
lon_S 129038131500
clpX_S 131576132850
clpP_S 133101133724
tig_S 134034135332
KP1_1251_S 149788150606
KP1_1248_S 152313153491
yajR_S 153651155015
KP1_1246_S 155060155644
apbA_S 155743156654
thiJ_S 156611157210
nrdR_S 167181167630
yajI_S 167778168317
tsx_S 168616169500
KP1_1228_S 169555170250
KP1_1227_S 170275170640
KP1_1211_S 181402182268
KP1_1209_S 184220184765
KP1_1207_S 184952185593
KP1_1206_S 185860186762
phoE 252573252992
crl_S 299288299686
frsA_S 299744300988
gpt_S 301094301552
pepD_S 301810303267
yafP_S 303310303762
yafE_S 324444325214
KP1_1068_S 325306326112
yafC_S 327501328406
dkgB_S 328452329255
3455693NODE_5_length_316913_cov_7.693069316913spy_S 1142711909 EMBL GBK
nadE_S 1296113788
osmE_S 1407114409
celA_S 1468815008
celC_S 1656816915
KP1_2532_S 256746257081
ydgB_S 257078257800
ydgI_S 257837259219
KP1_2535_S 259397260347
KP1_2536_S 260344260526
3455712NODE_6_length_309956_cov_11.857160309956yjgB_S 25023521 EMBL GBK
KP1_0569_S 36524536
KP1_0568_S 45265413
KP1_0567_S 54246248
KP1_0517_S 5500855748
KP1_0516_S 5573356836
KP1_0515_S 5574556863
KP1_0514_S 5684757980
KP1_0513_S 5808658730
rplI (50S ribosomal protein L9) 100691101140
rpsR (30S ribosomal protein S18) 101182101409
priB_S 101414101581
rpsF (30S ribosomal protein S6) 101734102129
KP1_0467_S 102470102745
KP1_0446_S 119507119704
KP1_0445_S 119877120218
hflC_S 120301121305
hflK_S 121308122570
hflX_S 122636123916
hfq_S 123992124300
frdD_S 145317145706
blc_S 145820146353
sugE_S 146350146667
ecnB_S 146811146957
ecnA_S 147117147248
efp_S 147322147888
hmsS_S 182348182797
KP1_0379_S 182843183676
KP1_0378_S 183839184537
cbpA_S 184683185600
KP1_0375_S 185585185905
ssb_S 256238256762
uvrA_S 257014259839
KP1_0300_S 259840260196
KP1_0299_S 260200260616
pgi 289535289966
iclR_S 302015302941
aceK_S 302992304776
aceA_S 304879306198
metA_S 308125309054
yjaB_S 309211309672
3455710NODE_7_length_304268_cov_9.252110304268aroC_S 3343434522 EMBL GBK
mepA_S 3452535349
yfcA_S 3534936158
yfcM_S 3615836706
KP1_3965_S 3673837019
flk_S 4192042897
KP1_3960_S 4289643024
pdxB_S 4300844144
KP1_3958_S 4420845221
truA_S 4522146033
dedA_S 4606046719
accD_S 4684247825
folX_S 6595366315
yfcG_S 6638167010
yfcF_S 6719167829
yfcD_S 6850169052
nuoA_S 8104481490
nuoB_S 8150682180
nuoC_S 8226784075
nuoE_S 8407884578
nuoF_S 8457585912
yejM_S 147371149131
KP1_3855_S 149150149377
yejK_S 149564150571
KP1_3853_S 150591151352
KP1_3852_S 151396152031
rsuA_S 156713157432
bcr_S 157429158625
KP1_3844_S 158957159301
yejE_S 160896161921
folE_S 188824189492
galS_S 190821191843
mglB_S 192140193138
mglA_S 193257194777
wzi (Wzi outer membrane protein of cps cluster) 284854285300
3455714NODE_8_length_266958_cov_10.246856266958KP1_4281_S 170712172388 EMBL GBK
emrA_S 174079175251
emrR_S 175377175877
ygaH_S 175998176333
smpB_S 240296240778
KP1_4197_S 240889241365
KP1_4196_S 241355241645
smpA_S 241712242053
ppnK_S 243949244827
grpE_S 244952245542
rpsP (30S ribosomal protein S16) 249548249796
rplS (50S ribosomal protein L19) 251202251549
3455703NODE_9_length_265420_cov_11.839353265420yicE_S 4782149221 EMBL GBK
gltS_S 4986950699
glpK_S 5081452325
glpF_S 5234753198
KP1_5367_S 5364153886
sbp_S 5403855027
rpmB (50S ribosomal protein L28) 8577686012
rpmG (50S ribosomal protein L33) 8603386200
KP1_5309_S 104922105869
KP1_5307_S 105873107144
yibO_S 107154108779
yibN_S 108944109375
grxC_S 109480109731
secB_S 109792110259
KP1_5262_S 151098151808
tkrA_S 151917152888
KP1_5260_S 152913154193
KP1_5259_S 154298155233
KP1_5258_S 155237155986
KP1_5213_S 210238211269
KP1_5210_S 213188213757
prlC_S 221547223589
yhiP_S 224495225967
uspA_S 226224226661
yhiO_S 227044227379
pitA_S 227435228931
3455697NODE_10_length_214969_cov_11.775622214969KP1_4987_S 80828312 EMBL GBK
prmA_S 82829163
KP1_4984_S 1061610858
accC_S 1096912318
accB_S 1232912796
KP1_4980_S 1281913271
KP1_4979_S 1349514103
KP1_4978_S 1410315119
KP1_4977_S 1533415525
mdh 3458735063
rplM (50S ribosomal protein L13) 4012740555
rpsI (30S ribosomal protein S9) 4057140963
ptsO_S 5874659018
KP1_4927_S 5901559869
ptsN_S 5991560403
yhbH_S 6047460761
rpoN_S 6078462217
yhbG_S 6226562990
yhbN_S 6299763542
KP1_4921_S 6351164086
yrbI_S 6408364649
rplU (50S ribosomal protein L21) 7341573726
rpmA (50S ribosomal protein L27) 7374774004
infB 9215192468
rpsO (30S ribosomal protein S15) 9510995378
yhbW_S 102292103299
yhbV_S 103443104336
yhbU_S 104327105322
KP1_4871_S 105544106068
KP1_4870_S 106062106565
KP1_4868_S 106892107335
yhbO_S 107297107962
KP1_4865_S 108685109725
yraP_S 109847110422
yraO_S 110432111058
KP1_4861_S 111048111434
KP1_4826_S 126868127164
KP1_4825_S 127161127559
KP1_4824_S 127562127867
KP1_4823_S 127913128281
KP1_4822_S 128431128814
KP1_4816_S 135555136109
ygjU_S 136125137372
ygjT_S 137639138610
ygjR_S 138882139871
KP1_4812_S 139945140445
rpsU (30S ribosomal protein S21) 186275186490
ureB_S 193031193351
ureA_S 193361193663
ureD_S 193673194497
KP1_4750_S 194895195512
folB_S 195617196003
uppP_S 196202197023
ribB_S 205924206577
ygiE_S 206639207409
ygiD_S 207596208387
ygiC_S 208432209592
KP1_4731_S 209598210269
3455699NODE_11_length_182009_cov_7.448244182009KP1_2703_S 9891099665 EMBL GBK
KP1_2702_S 99842100153
KP1_2700_S 100721101749
KP1_2697_S 103352104023
yneH_S 116485117411
yneI_S 117492118385
yneJ_S 118982119860
KP1_2673_S 119814120296
KP1_2672_S 120441121385
blaSHV (SHV beta-lactamase) 153189154046
3455679NODE_12_length_177872_cov_10.692501177872epd_S 4851513 EMBL GBK
pgk_S 15532716
fbaA_S 28143893
yggB_S 40844941
yggA_S 50935728
yggE_S 58186585
KP1_4633_S 1086511194
KP1_4632_S 1135511939
pepP_S 1196313279
KP1_4629_S 1446515667
KP1_4618_S 2680527533
KP1_4617_S 2758327894
yqfA_S 2805828717
KP1_4613_S 3009730363
KP1_4612_S 3034430754
fldB_S 3076131282
xerD_S 3138332279
dsbC_S 3230233015
KP1_4524_S 106170107570
KP1_4523_S 107578109005
KP1_4521_S 109073109846
KP1_4520_S 109843110322
galR_S 110283111299
ygdP_S 119128119658
ptsP_S 119671121917
lgt_S 122163123038
thyA_S 123045123839
ppdA_S 124109124576
argA_S 138220139551
amiC_S 139743141032
cobD_S 141050142126
pduX_S 142130143032
pduW_S 143088144302
KP1_4457_S 168973169698
KP1_4456_S 169695170480
KP1_4455_S 170491171285
KP1_4453_S 171992172729
KP1_4452_S 172731173012
cbiQ_S 172999173676
3455680NODE_13_length_152343_cov_8.841695152343pyrD_S 9610597142 EMBL GBK
ssuE_S 9736597940
ssuA_S 9793398895
ssuD_S 98892100037
ssuC_S 100048100839
KP1_1916_S 130195131424
msbA_S 132456134204
ihfB_S 136711136998
rpsA (30S ribosomal protein S1) 137150138823
3455684NODE_14_length_125682_cov_9.621947125682suhB_S 54536256 EMBL GBK
yfhQ_S 63777111
iscR_S 73467837
iscS_S 80169230
KP1_4113_S 92579643
iscA_S 96619984
hscB_S 1005910574
hemF_S 102046102945
amiA_S 102945103817
KP1_4027_S 103867104007
ypeA_S 104014104454
KP1_4024_S 104441104890
KP1_4023_S 104952105527
KP1_4022_S 105622106521
3455705NODE_15_length_106236_cov_12.045055106236asd_S 2125422408 EMBL GBK
glgB_S 2264724833
glgX_S 2492626806
glgC_S 2688728182
glgA_S 2818229615
aroK_S 7073271253
aroB_S 7130972403
dam_S 7385374680
rpe_S 7469875375
gph_S 7536876129
trpS_S 7612277126
cysG_S 7719978572
nirD_S 7872679052
yhfC_S 8315084337
ppiA_S 8461485183
KP1_5076_S 8529085457
KP1_5075_S 8544786049
pabA_S 8608286645
crp_S 9007690708
KP1_5070_S 9101591419
prkB_S 9147492343
KP1_5068_S 9238092598
yheT_S 9259593617
yheS_S 9382195725
rpsL (30S ribosomal protein S12) 102533102907
rpsG (30S ribosomal protein S7) 103004103474
3455698NODE_16_length_103723_cov_11.066799103723yqgF_S 7504275458 EMBL GBK
KP1_4657_S 7545876021
gshB_S 7619677146
KP1_4654_S 7716777973
endA_S 7799078754
KP1_4652_S 7879279292
3455713NODE_17_length_101532_cov_12.476640101532rpmH (50S ribosomal protein L34) 5173351873 EMBL GBK
atpF_S 8013580599
atpE_S 8065680895
atpB_S 8094581760
atpI_S 8176882220
gidB_S 8276583388
rbsC_S 9507896043
rbsB_S 9607196961
rbsK_S 9706597994
yieP_S 100397101098
3455701NODE_18_length_94438_cov_12.62623194438polA_S 49417733 EMBL GBK
engB_S 80818713
KP1_0026_S 92979803
hemN_S 999211365
glnG_S 1162213031
glnL_S 1304014089
glnA_S 1427815687
bipA_S 1606617889
rhaD_S 4230643136
rhaA_S 4328644551
rhaB_S 4454246008
rhaS_S 4631947155
rhaR_S 4722948074
rhaT_S 4810749141
sodA_S 4942550051
KP1_0077_S 5012450798
cpxA_S 5086652239
cpxR_S 5223652934
cpxP_S 5308453587
rpmE (50S ribosomal protein L31) 6409264304
yijC_S 8893289564
KP1_0118_S 8958089939
trmA_S 8999191091
KP1_0120_S 9129391415
btuB_S 9145893296
KP1_0122_S 9324194092
3455694NODE_19_length_86538_cov_12.22755986538fadA_S 65367699 EMBL GBK
fre_S 78068507
ubiD_S 855710032
rfaH_S 1021110699
tatD_S 1069611487
tatC_S 1153212311
tatB_S 1231412850
tatA_S 1285413153
ubiB_S 1323514875
KP1_0193_S 1487215477
ubiE_S 1549116246
yigN_S 1631717765
udp_S 1790118662
metR_S 2231823271
yigM_S 2315924058
KP1_0183_S 2414724947
pldB_S 2499225984
rhtB_S 2609426714
yigB_S 3641337129
xerC_S 3712938031
KP1_0169_S 3802838735
dapF_S 3873239559
KP1_0167_S 3959239795
cyaY_S 3994240262
ilvY_S 7551576489
ilvA_S 7648677973
ilvD_S 7803379883
ilvE_S 7994480873
ilvM_S 8089081147
3455706 NODE_20_length_83428_cov_8.674387 83428
3455711 NODE_21_length_76542_cov_7.372618 76542
3455704NODE_22_length_72991_cov_8.62076872991ycfW_S 1033911583 EMBL GBK
ycfV_S 1158312284
ycfU_S 1227713485
mfd_S 1378017226
ycfS_S 1739018349
ycfQ_S 1898519620
iutA 1985222053
KP1_2092_S 2785428210
ptsG2_S 2847229905
ycfH_S 3020230996
holB_S 3100732011
tmk_S 3200832649
yceG_S 3263933661
pabC_S 3366334472
fabF_S 3459835839
fabG_S 3637637110
fabD_S 3712338052
fabH_S 3806839021
plsX_S 3907540172
rpmF (50S ribosomal protein L32) 4037640549
KP1_2077_S 4056641087
yceF_S 4122941813
mdoC_S 6717568335
KP1_2048_S 6837068963
KP1_2047_S 6903069575
ycdZ_S 6970770189
KP1_2044_S 7087071607
3455686NODE_23_length_49953_cov_7.79403949953KP1_2225_S 1758817932 EMBL GBK
KP1_2224_S 1802718305
yeaA_S 1834918762
gapA 1934419793
KP1_2220_S 2017121055
yeaE_S 2111221996
3455707NODE_24_length_46696_cov_10.15415246696glyA_S 72378490 EMBL GBK
hmpA_S 881610006
KP1_4132_S 1008110419
yfhA_S 1048511822
yfhG_S 1180912516
yfhK_S 1252513964
nadB_S 3260134220
yfiC_S 3420534963
srmB_S 3507436405
yfiD_S 3645136834
ung_S 3714837837
3455708 NODE_25_length_46520_cov_8.981840 46520
3455702NODE_26_length_34872_cov_12.71187434872rplK (50S ribosomal protein L11) 19432371 EMBL GBK
rplA (50S ribosomal protein L1) 23753079
rplJ (50S ribosomal protein L10) 34933990
rplL (50S ribosomal protein L7/L12) 40574422
rpoB 64036903
rsd_S 2313423631
nudC_S 2372524498
hemE_S 2453925603
nfi_S 2561626287
KP1_0239_S 2633026920
KP1_0241_S 2710727379
KP1_0242_S 2738628087
zraP_S 2809128528
3455681 NODE_27_length_29708_cov_12.141612 29708
3455682NODE_28_length_26266_cov_13.82332726266rpsJ (30S ribosomal protein S10) 19202231 EMBL GBK
rplC (50S ribosomal protein L3) 22642893
rplD (50S ribosomal protein L4) 29043509
rplW (50S ribosomal protein L23) 35063808
rplB (50S ribosomal protein L2) 38264647
rpsS (30S ribosomal protein S19) 46644942
rplV (50S ribosomal protein L22) 49575289
rpsC (30S ribosomal protein S3) 53076005
rplP (50S ribosomal protein L16) 60186428
rpmC (50S ribosomal protein L29) 64286619
rpsQ (30S ribosomal protein S17) 66196873
rplN (50S ribosomal protein L14) 70397410
rplX (50S ribosomal protein L24) 74217735
rplE (50S ribosomal protein L5) 77508289
rpsN (30S ribosomal protein S14) 83048609
rpsH (30S ribosomal protein S8) 86439035
rplF (50S ribosomal protein L6) 90489581
rplR (50S ribosomal protein L18) 95919944
rpsE (30S ribosomal protein S5) 995910462
rpmD (50S ribosomal protein L30) 1046610645
rplO (50S ribosomal protein L15) 1064911083
secY_S 1109112422
rpmJ (50S ribosomal protein L36) 1245612572
rpsM (30S ribosomal protein S13) 1271913075
rpsK (30S ribosomal protein S11) 1309213481
rpsD (30S ribosomal protein S4) 1351514135
KP1_5015_S 1416115150
rplQ (50S ribosomal protein L17) 1519115577
KP1_5012_S 1568616054
def_S 2100821517
smf_S 2164622770
KP1_5003_S 2274223215
yrdD_S 2324223784
yrdC_S 2374424361
aroE_S 2436525183
KP1_4999_S 2518025437
yrdA_S 2541325967
3455689 NODE_29_length_20379_cov_11.243688 20379
3455696 NODE_30_length_5756_cov_9.869189 5756
3455709 NODE_31_length_4495_cov_12.853731 4495
3455683 NODE_32_length_1779_cov_6.329167 1779
3455695 NODE_33_length_1334_cov_83.654251 1334
3455692 NODE_34_length_1134_cov_18.517874 1134
3455690 NODE_35_length_660_cov_94.424242 660
3455691 NODE_36_length_656_cov_33.105925 656
3455700 NODE_38_length_607_cov_95.096457 607
3455715 NODE_39_length_577_cov_67.094142 577