Full information on isolate INF089 (id:6184)
Projects
Provenance/primary metadata
- id
- 6184
- isolate
- INF089
- sender
- Kat Holt, Melbourne U
- curator
- Auto Tagger
- update history
- 9 updates show details
- date entered
- 2017-12-04
- datestamp
- 2024-03-26
- taxonomic designation
- K. quasipneumoniae subsp. similipneumoniae
- phylogroup from ST
- Kp2 (7 loci)
- isolation year
- 2013
- city
- Melbourne
- country
- Australia
- continent
- Oceania
- source type
- Human
- host
- Human
- source details
- Urine
- infection
- UTI
- accession number
- ERR1008648
Sequence bin
- method
- Illumina
- contigs
- 29
- total length
- 5,437,415 bp
- max length
- 1,358,734 bp
- mean length
- 187,498 bp
- N50
- 578,360
- L50
- 4
- N90
- 119,170
- L90
- 12
- N95
- 83,939
- L95
- 15
- %GC
- 57.92
- Ns
- 132
- gaps
- 121
- loci tagged
- 665
Assembly checks
| Check | Status | Warn/fail reason |
|---|---|---|
| Number of contigs | ||
| Assembly size | ||
| Minimum N50 | ||
| %GC |
Annotation quality metrics
Scheme completion
| Scheme | Scheme loci | Designated loci | Annotation | |
|---|---|---|---|---|
| Score | Status | |||
| MLST | 7 | 7 | 100 | |
| Ribosomal MLST | 53 | 53 | 100 | |
| scgMLST629_S | 629 | 610 | 96 | |
Analysis
Kleborate
- species
- Klebsiella quasipneumoniae subsp. quasipneumoniae
- species_match
- strong
- QC_warnings
- ambiguous_bases
- virulence_score
- 0
- resistance_score
- 0
- num_resistance_classes
- 0
- num_resistance_genes
- 0
- YbST
- 0
- CbST
- 0
- AbST
- 0
- SmST
- 0
- RmST
- 0
- K_locus
- KL11
- K_type
- K11
- K_locus_problems
- none
- K_locus_confidence
- Perfect
- K_locus_identity
- 100.00%
- O_locus
- O3/O3a
- O_type
- O3/O3a
- O_locus_problems
- none
- O_locus_confidence
- Very high
- O_locus_identity
- 95.96%
- Bla_chr
- OKP-A-3*
Analysis performed: 2025-05-12; Kleborate v2.3.2
Similar isolates (determined by LIN codes)
- Scheme
- scgMLST629_S
- LIN code
- 2_0_194_0_0_0_0_0_0_0
- Phylogroup
- Kp2
- Sublineage
- SL11904
- Clonal group
- CG13481
Schemes and loci
Navigate and select schemes within tree to display allele designations
Tools
Export:
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Analysis: