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Full information on isolate INF349 (id:6177)

Projects

This isolate is a member of the following projects:

Public isolates
This project contains the isolates that should be publicly available through the public access database.
Gorrie et al. 2017
Gastrointestinal Carriage Is a Major Reservoir of Klebsiella pneumoniae Infection in Intensive Care Patients (PMID: 28369261)

Provenance/primary metadata

id
6177
isolate
INF349
sender
Kat Holt, Melbourne U
curator
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update history
9 updates show details
date entered
2017-12-04
datestamp
2024-03-26
taxonomic designation
K. variicola
phylogroup from ST
Kp3 (7 loci)
isolation year
2014
city
Melbourne
country
Australia
continent
Oceania
source type
Human
host
Human
source details
Bronchoalveolar lavage
infection
Pneumonia
accession number
ERR1015282

Sequence bin

method
Illumina
contigs
31
total length
5,689,814 bp
max length
1,049,487 bp
mean length
183,543 bp
N50
344,386
L50
5
N90
147,202
L90
14
N95
106,681
L95
17
%GC
57.27
Ns
76
gaps
66
loci tagged
676

Show sequence bin

Assembly checks

CheckStatusWarn/fail reason
Number of contigs
Assembly size
Minimum N50
%GC

Annotation quality metrics

Scheme completion

SchemeScheme lociDesignated lociAnnotation
ScoreStatus
MLST77100
Ribosomal MLST5353100
scgMLST629_S62962198

Similar isolates (determined by LIN codes)

Scheme
scgMLST629_S
LIN code
1_0_527_0_0_0_0_0_0_0
Phylogroup
Kp3
Sublineage
SL11845
Clonal group
CG13412

Show all thresholds

PrefixThresholdMatching isolates
1_0_527_0_0_072
1_0_527_0_0_0_042
1_0_527_0_0_0_0_022
1_0_527_0_0_0_0_0_012
1_0_527_0_0_0_0_0_0_002
16101702
1_05851584
1_0_5271902
1_0_527_0432
1_0_527_0_0102
1_0_527_0_0_072
1_0_527_0_0_0_042
1_0_527_0_0_0_0_022
1_0_527_0_0_0_0_0_012
1_0_527_0_0_0_0_0_0_002

Schemes and loci

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Tools

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