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Full information on isolate INF047 (id:6169)

Projects

This isolate is a member of the following projects:

Public isolates
This project contains the isolates that should be publicly available through the public access database.
Gorrie et al. 2017
Gastrointestinal Carriage Is a Major Reservoir of Klebsiella pneumoniae Infection in Intensive Care Patients (PMID: 28369261)

Provenance/primary metadata

id
6169
isolate
INF047
sender
Kat Holt, Melbourne U
curator
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update history
9 updates show details
date entered
2017-12-04
datestamp
2024-03-26
taxonomic designation
K. variicola
phylogroup from ST
Mixed: Kp3 (6 loci), Kp5 (1 locus)
isolation year
2013
city
Melbourne
country
Australia
continent
Oceania
source type
Human
host
Human
source details
Urine
infection
UTI
accession number
ERR1023780

Sequence bin

method
Illumina
contigs
34
total length
5,544,012 bp
max length
1,165,724 bp
mean length
163,060 bp
N50
456,629
L50
4
N90
107,106
L90
13
N95
86,654
L95
16
%GC
57.48
Ns
49
gaps
40
loci tagged
675

Show sequence bin

Assembly checks

CheckStatusWarn/fail reason
Number of contigs
Assembly size
Minimum N50
%GC

Annotation quality metrics

Scheme completion

SchemeScheme lociDesignated lociAnnotation
ScoreStatus
MLST77100
Ribosomal MLST5353100
scgMLST629_S62962098

Similar isolates (determined by LIN codes)

Scheme
scgMLST629_S
LIN code
1_0_547_0_0_0_0_0_0_0
Phylogroup
Kp3
Sublineage
SL11899
Clonal group
CG13476

Show all thresholds

PrefixThresholdMatching isolates
1_0_547_0_0_071
1_0_547_0_0_0_041
1_0_547_0_0_0_0_021
1_0_547_0_0_0_0_0_011
1_0_547_0_0_0_0_0_0_001
16101702
1_05851584
1_0_5471901
1_0_547_0431
1_0_547_0_0101
1_0_547_0_0_071
1_0_547_0_0_0_041
1_0_547_0_0_0_0_021
1_0_547_0_0_0_0_0_011
1_0_547_0_0_0_0_0_0_001

Schemes and loci

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Tools

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