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Full information on isolate INF052 (id:6159)

Projects

This isolate is a member of the following projects:

Public isolates
This project contains the isolates that should be publicly available through the public access database.
Gorrie et al. 2017
Gastrointestinal Carriage Is a Major Reservoir of Klebsiella pneumoniae Infection in Intensive Care Patients (PMID: 28369261)

Provenance/primary metadata

id
6159
isolate
INF052
sender
Kat Holt, Melbourne U
curator
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update history
10 updates show details
date entered
2017-12-04
datestamp
2025-05-29
taxonomic designation
K. pneumoniae
phylogroup from ST
Kp1 (7 loci)
isolation year
2013
city
Melbourne
country
Australia
continent
Oceania
source type
Human
host
Human
source details
Tissue
infection
Soft tissue
accession number
ERR1023785

Sequence bin

method
Illumina
contigs
33
total length
5,297,879 bp
max length
780,441 bp
mean length
160,542 bp
N50
368,516
L50
6
N90
134,701
L90
14
N95
124,712
L95
16
%GC
57.51
Ns
122
gaps
102
loci tagged
3,418

Show sequence bin

Assembly checks

CheckStatusWarn/fail reason
Number of contigs
Assembly size
Minimum N50
%GC

Annotation quality metrics

Scheme completion

SchemeScheme lociDesignated lociAnnotation
ScoreStatus
MLST77100
Ribosomal MLST5353100
scgMLST629_S62962799
Kpn_cgMLST2752273799

Similar isolates (determined by LIN codes)

Scheme
scgMLST629_S
LIN code
0_0_1514_0_0_0_0_0_0_0
Phylogroup
Kp1
Sublineage
SL11849
Clonal group
CG13422

Show all thresholds

PrefixThresholdMatching isolates
0_0_1514_0_0_072
0_0_1514_0_0_0_042
0_0_1514_0_0_0_0_022
0_0_1514_0_0_0_0_0_012
0_0_1514_0_0_0_0_0_0_002
061041312
0_058541312
0_0_15141902
0_0_1514_0432
0_0_1514_0_0102
0_0_1514_0_0_072
0_0_1514_0_0_0_042
0_0_1514_0_0_0_0_022
0_0_1514_0_0_0_0_0_012
0_0_1514_0_0_0_0_0_0_002

Schemes and loci

Navigate and select schemes within tree to display allele designations

Tools

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