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Full information on isolate INF131 (id:6154)

Projects

This isolate is a member of the following projects:

Public isolates
This project contains the isolates that should be publicly available through the public access database.
Gorrie et al. 2017
Gastrointestinal Carriage Is a Major Reservoir of Klebsiella pneumoniae Infection in Intensive Care Patients (PMID: 28369261)

Provenance/primary metadata

id
6154
isolate
INF131
sender
Kat Holt, Melbourne U
curator
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update history
11 updates show details
date entered
2017-12-04
datestamp
2025-05-29
taxonomic designation
K. pneumoniae
phylogroup from ST
Kp1 (7 loci)
isolation year
2013
city
Melbourne
country
Australia
continent
Oceania
source type
Human
host
Human
source details
Urine
infection
UTI
accession number
ERR1008690

Sequence bin

method
Illumina
contigs
54
total length
5,260,046 bp
max length
541,486 bp
mean length
97,409 bp
N50
263,326
L50
7
N90
59,874
L90
24
N95
45,693
L95
29
%GC
57.52
Ns
72
gaps
66
loci tagged
3,416

Show sequence bin

Assembly checks

CheckStatusWarn/fail reason
Number of contigs
Assembly size
Minimum N50
%GC

Annotation quality metrics

Scheme completion

SchemeScheme lociDesignated lociAnnotation
ScoreStatus
MLST77100
Ribosomal MLST5353100
scgMLST629_S62962699
Kpn_cgMLST2752273599

Similar isolates (determined by LIN codes)

Scheme
scgMLST629_S
LIN code
0_0_1521_0_0_0_0_0_0_0
Phylogroup
Kp1
Sublineage
SL11897
Clonal group
CG13474

Show all thresholds

PrefixThresholdMatching isolates
0_0_1521_0_0_071
0_0_1521_0_0_0_041
0_0_1521_0_0_0_0_021
0_0_1521_0_0_0_0_0_011
0_0_1521_0_0_0_0_0_0_001
061041312
0_058541312
0_0_15211901
0_0_1521_0431
0_0_1521_0_0101
0_0_1521_0_0_071
0_0_1521_0_0_0_041
0_0_1521_0_0_0_0_021
0_0_1521_0_0_0_0_0_011
0_0_1521_0_0_0_0_0_0_001

Schemes and loci

Navigate and select schemes within tree to display allele designations

Tools

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