Home About Us Contact What's New
Home>Organism>Klebsiella PasteurMLST>Isolate information
Help

Full information on isolate INF107 (id:6152)

Projects

This isolate is a member of the following projects:

Public isolates
This project contains the isolates that should be publicly available through the public access database.
Gorrie et al. 2017
Gastrointestinal Carriage Is a Major Reservoir of Klebsiella pneumoniae Infection in Intensive Care Patients (PMID: 28369261)

Provenance/primary metadata

id
6152
isolate
INF107
sender
Kat Holt, Melbourne U
curator
Auto Tagger
update history
9 updates show details
date entered
2017-12-04
datestamp
2024-03-26
taxonomic designation
K. pneumoniae
phylogroup from ST
Kp1 (7 loci)
isolation year
2013
city
Melbourne
country
Australia
continent
Oceania
source type
Human
host
Human
source details
Urine
infection
UTI
accession number
ERR1008666

Sequence bin

method
Illumina
contigs
26
total length
5,144,407 bp
max length
989,063 bp
mean length
197,862 bp
N50
376,012
L50
4
N90
124,787
L90
11
N95
99,500
L95
13
%GC
57.50
Ns
44
gaps
37
loci tagged
682

Show sequence bin

Assembly checks

CheckStatusWarn/fail reason
Number of contigs
Assembly size
Minimum N50
%GC

Annotation quality metrics

Scheme completion

SchemeScheme lociDesignated lociAnnotation
ScoreStatus
MLST77100
Ribosomal MLST5353100
scgMLST629_S62962899

Similar isolates (determined by LIN codes)

Scheme
scgMLST629_S
LIN code
0_0_1518_0_0_0_0_0_0_0
Phylogroup
Kp1
Sublineage
SL11896
Clonal group
CG13473

Show all thresholds

PrefixThresholdMatching isolates
0_0_1518_0_0_071
0_0_1518_0_0_0_041
0_0_1518_0_0_0_0_021
0_0_1518_0_0_0_0_0_011
0_0_1518_0_0_0_0_0_0_001
061041312
0_058541312
0_0_15181901
0_0_1518_0431
0_0_1518_0_0101
0_0_1518_0_0_071
0_0_1518_0_0_0_041
0_0_1518_0_0_0_0_021
0_0_1518_0_0_0_0_0_011
0_0_1518_0_0_0_0_0_0_001

Schemes and loci

Navigate and select schemes within tree to display allele designations

Tools

Export:
Third party:
Analysis: