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Full information on isolate INF324 (id:6146)

Projects

This isolate is a member of the following projects:

Public isolates
This project contains the isolates that should be publicly available through the public access database.
Gorrie et al. 2017
Gastrointestinal Carriage Is a Major Reservoir of Klebsiella pneumoniae Infection in Intensive Care Patients (PMID: 28369261)

Provenance/primary metadata

id
6146
isolate
INF324
sender
Kat Holt, Melbourne U
curator
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update history
9 updates show details
date entered
2017-12-04
datestamp
2024-03-26
taxonomic designation
K. pneumoniae
phylogroup from ST
Kp1 (7 loci)
isolation year
2014
city
Melbourne
country
Australia
continent
Oceania
source type
Human
host
Human
source details
Urine
infection
UTI
accession number
ERR1008777

Sequence bin

method
Illumina
contigs
20
total length
5,118,147 bp
max length
1,866,791 bp
mean length
255,908 bp
N50
849,730
L50
2
N90
132,534
L90
8
N95
86,649
L95
10
%GC
57.70
Ns
19
gaps
18
loci tagged
681

Show sequence bin

Assembly checks

CheckStatusWarn/fail reason
Number of contigs
Assembly size
Minimum N50
%GC

Annotation quality metrics

Scheme completion

SchemeScheme lociDesignated lociAnnotation
ScoreStatus
MLST77100
Ribosomal MLST5353100
scgMLST629_S62962699

Similar isolates (determined by LIN codes)

Scheme
scgMLST629_S
LIN code
0_0_1525_0_0_0_0_0_0_0
Phylogroup
Kp1
Sublineage
SL11894
Clonal group
CG13471

Show all thresholds

PrefixThresholdMatching isolates
0_0_1525_0_0_071
0_0_1525_0_0_0_041
0_0_1525_0_0_0_0_021
0_0_1525_0_0_0_0_0_011
0_0_1525_0_0_0_0_0_0_001
061041312
0_058541312
0_0_15251901
0_0_1525_0431
0_0_1525_0_0101
0_0_1525_0_0_071
0_0_1525_0_0_0_041
0_0_1525_0_0_0_0_021
0_0_1525_0_0_0_0_0_011
0_0_1525_0_0_0_0_0_0_001

Schemes and loci

Navigate and select schemes within tree to display allele designations

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